{"id":"W2061997872","doi":"10.1074/jbc.m404299200","title":"Expression and Secretion of Salmonella Pathogenicity Island-2 Virulence Genes in Response to Acidification Exhibit Differential Requirements of a Functional Type III Secretion Apparatus and SsaL","year":2004,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":184,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"","keywords":"Secretion; Virulence; Pathogenicity island; Salmonella; Pathogenicity; Biology; Gene; Microbiology; Type three secretion system; Genetics; Bacteria; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001243631,0.0002529074,0.0002656608,0.000196511,0.00008088692,0.000334854,0.00009585156,0.0002283411,0.0005918652],"category_scores_gemma":[0.0002484849,0.0001836987,0.0003340476,0.0001669082,0.0002066793,0.0001919447,0.0003942455,0.0003741926,0.0002514178],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003218315,"about_ca_system_score_gemma":0.0001646585,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004610652,"about_ca_topic_score_gemma":0.0004771743,"domain_scores_codex":[0.999793,0.00002818593,0.00002255051,0.00003006902,0.00005581278,0.00007044531],"domain_scores_gemma":[0.9997671,0.00004183278,0.00006872864,0.00002545044,0.0000297074,0.00006716478],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007893167,0.000009034802,0.0003599795,0.00000574162,0.000001640305,0.0000208549,0.00001107626,0.00001604021,0.9993737,0.00001011198,0.000004554271,0.0001081684],"study_design_scores_gemma":[0.00002796668,0.0005245619,0.1247489,0.000008040082,0.00001818404,0.0005589222,0.0001730542,0.002210398,0.8707829,0.00008735499,0.000839762,0.00002004839],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990277,0.0001408074,0.0003645192,0.00003221625,0.000004820652,0.000006642198,0.0001931849,0.00001182006,0.0002183548],"genre_scores_gemma":[0.9973472,0.0000971981,0.000595857,0.00005879125,0.000006029146,0.00002616455,0.001020454,0.00001303206,0.0008350601],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005918652,"threshold_uncertainty_score":0.002335072,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03031729539692474,"score_gpt":0.2845604801107004,"score_spread":0.2542431847137757,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}