{"id":"W2062227091","doi":"10.1093/nar/gkf542","title":"Engineered viruses to select genes encoding secreted and membrane-bound proteins in mammalian cells","year":2002,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Aegera Therapeutics (Canada)","funders":"","keywords":"Biology; Signal peptide; Replicon; Complementary DNA; cDNA library; Gene; Transmembrane protein; Viral envelope; Secretory pathway; Genomic library; Signal peptidase; Cell biology; Computational biology; Genetics; Recombinant DNA; Molecular biology; Virus; Genome; Endoplasmic reticulum; Peptide sequence; Golgi apparatus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003607596,0.0001249937,0.0001329584,0.0001769012,0.0002139921,0.0001464074,0.000244153,0.00008422746,0.008201735],"category_scores_gemma":[0.00005746906,0.0001211726,0.00002810214,0.0006810966,0.0001326821,0.0002544945,0.0002673402,0.0003533617,0.001317061],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002133849,"about_ca_system_score_gemma":0.000006881084,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001801218,"about_ca_topic_score_gemma":0.001034687,"domain_scores_codex":[0.9985218,0.0001183867,0.0001769302,0.0003649377,0.0002795112,0.0005384578],"domain_scores_gemma":[0.9994892,0.00006679371,0.00001722814,0.0002190287,0.0000175021,0.0001902757],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001676747,0.00004761943,0.0008016115,0.0000129655,0.000004280855,0.00002043881,0.0009414519,0.00005733199,0.9887716,0.000007076173,0.001188327,0.008130589],"study_design_scores_gemma":[0.0004238154,0.0002565845,0.0280325,0.00005275045,0.000004089675,0.0000293544,0.000302219,0.001862331,0.8467795,0.00001625557,0.121939,0.0003016088],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939579,0.00005887256,0.00003122191,0.0003811469,0.00005706674,0.000511926,0.00001196907,0.00003251613,0.004957328],"genre_scores_gemma":[0.99563,0.00009054407,0.001291045,0.0001199725,0.00004710129,0.00005149987,0.000001390374,0.00002521329,0.002743234],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.141992,"threshold_uncertainty_score":0.9994605,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04835776902465207,"score_gpt":0.3010894719294999,"score_spread":0.2527317029048479,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}