{"id":"W2062673928","doi":"10.1128/jb.06211-11","title":"E622, a Miniature, Virulence-Associated Mobile Element","year":2011,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Western University; University of Regina","funders":"Canada Research Chairs","keywords":"Biology; Inverted repeat; Transposable element; Genetics; Virulence; Mobile genetic elements; Gene; Pseudomonas syringae; Genome; Operon; Horizontal gene transfer; Direct repeat; Microbiology; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004009363,0.00013404,0.0003690979,0.00002077662,0.00007985804,0.00001205712,0.0003053687,0.000134278,0.0009571491],"category_scores_gemma":[0.00008949223,0.00004756549,0.0001532166,0.0001238069,0.00006723031,0.0001108212,0.0000808207,0.0001836612,0.00002974119],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003676188,"about_ca_system_score_gemma":0.00001490443,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000283791,"about_ca_topic_score_gemma":0.0001191201,"domain_scores_codex":[0.9988399,0.0001550423,0.0004794787,0.0001351673,0.0001145666,0.0002758768],"domain_scores_gemma":[0.9990609,0.0001257931,0.0005466256,0.00003820904,0.0001393136,0.00008910665],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001736563,0.0002249532,0.02212281,0.000002271728,0.0001294566,0.00007196692,0.0002925558,1.184418e-7,0.9629163,0.00003249495,0.001225595,0.01280783],"study_design_scores_gemma":[0.0002854848,0.001971577,0.9606772,0.00002895866,0.00004302257,0.000261397,0.000253766,0.000001095274,0.00426768,0.0002264931,0.03182929,0.0001540068],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982538,0.0002979576,9.475808e-7,0.0001197026,0.0005739365,0.00008666707,0.00007220963,0.00001457123,0.0005802495],"genre_scores_gemma":[0.9988646,0.0003093787,0.0002689383,0.0002170641,0.0002339646,0.000007335516,0.00001461577,8.553371e-7,0.0000832625],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9586486,"threshold_uncertainty_score":0.9999561,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03030038283233666,"score_gpt":0.2162455343597225,"score_spread":0.1859451515273859,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}