{"id":"W2062780999","doi":"10.1016/j.ijmm.2010.09.002","title":"The complete DNA sequence and analysis of the virulence plasmid and of five additional plasmids carried by Shiga toxin-producing Escherichia coli O26:H11 strain H30☆","year":2011,"lang":"en","type":"article","venue":"International Journal of Medical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"European Commission; Public Health Agency of Canada","keywords":"Plasmid; Biology; Virulence; ORFS; Escherichia coli; Genetics; Microbiology; Replicon; Gene; Open reading frame; Peptide sequence","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007886496,0.0001123907,0.0002721112,0.00006554579,0.00007878016,0.00001005325,0.000705706,0.0001266124,0.0001802874],"category_scores_gemma":[0.001588606,0.00006857538,0.0001195126,0.0001239773,0.001450404,0.000007770038,0.0004006685,0.0002620104,2.24146e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002134279,"about_ca_system_score_gemma":0.0002296796,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008047844,"about_ca_topic_score_gemma":0.0001801264,"domain_scores_codex":[0.9986068,0.0002303104,0.0004751701,0.0001894029,0.0003371316,0.0001611885],"domain_scores_gemma":[0.9985722,0.0003528724,0.0004121769,0.0001325809,0.0004432445,0.00008689619],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002380265,0.00005230349,0.00298135,0.000008450857,0.001738226,0.000005901847,0.000248612,0.000007152662,0.9902246,0.000275891,0.003531335,0.0006881805],"study_design_scores_gemma":[0.005380288,0.002485593,0.2259001,0.0006116783,0.0009779469,0.0009009239,0.002582735,0.002063484,0.691362,0.001454285,0.06549416,0.0007867564],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947786,0.0007710677,0.0001480043,0.001485127,0.0001958116,0.00007017099,0.00249201,0.000001063071,0.00005814868],"genre_scores_gemma":[0.997839,0.00112344,0.0004424369,0.0003743684,0.00008261834,0.000004947632,0.00008632462,0.000005584583,0.00004128771],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2988625,"threshold_uncertainty_score":0.5344075,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02149023424610518,"score_gpt":0.284129137853799,"score_spread":0.2626389036076938,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}