{"id":"W2062801794","doi":"10.1089/aid.2005.21.575","title":"Full-Length HIV Type 1 Genome Analysis Showing Evidence for HIV Type 1 Transmission from a Nonprogressor to Two Recipients Who Progressed to AIDS","year":2005,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Cohort; Transmission (telecommunications); Disease; Genome; Medicine; Human immunodeficiency virus (HIV); Virology; Viral disease; Lentivirus; Cohort study; Immunology; Biology; Genetics; Internal medicine; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.001227616,0.0003250499,0.0006180784,0.001087929,0.0009815317,0.0002237622,0.0006301841,0.0001955242,0.001588052],"category_scores_gemma":[0.0006377536,0.0002627498,0.00017226,0.001537009,0.0002964483,0.0002882452,0.0002967438,0.0005024195,0.001680984],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002403113,"about_ca_system_score_gemma":0.0001780346,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003600071,"about_ca_topic_score_gemma":0.0004554516,"domain_scores_codex":[0.9962857,0.0004777711,0.0004349609,0.001014712,0.0003677674,0.00141906],"domain_scores_gemma":[0.9973647,0.0007754256,0.00005694053,0.0006668956,0.0006591761,0.0004768615],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.01732658,0.001397994,0.3280081,0.0001115905,0.004552883,0.00006294603,0.003746432,0.00004802765,0.5200459,0.0005372915,0.01607124,0.108091],"study_design_scores_gemma":[0.0108176,0.05575111,0.2767733,0.001043398,0.001126208,0.00001235,0.0008397796,0.00004237614,0.08967546,0.0003610715,0.5619512,0.00160614],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9902647,0.006109413,0.0005606421,0.0008245654,0.0000591297,0.001558637,0.0003733173,0.00007799532,0.0001716273],"genre_scores_gemma":[0.9875988,0.0003232975,0.00387021,0.0001251772,0.0001852128,0.0003341433,0.0005570714,0.00004455527,0.006961494],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5458799,"threshold_uncertainty_score":0.9999825,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1309195865658904,"score_gpt":0.4201118619583016,"score_spread":0.2891922753924112,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}