{"id":"W2062801794","doi":"10.1089/aid.2005.21.575","title":"Full-Length HIV Type 1 Genome Analysis Showing Evidence for HIV Type 1 Transmission from a Nonprogressor to Two Recipients Who Progressed to AIDS","year":2005,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Cohort; Transmission (telecommunications); Disease; Genome; Medicine; Human immunodeficiency virus (HIV); Virology; Viral disease; Lentivirus; Cohort study; Immunology; Biology; Genetics; Internal medicine; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000251244,0.0002028606,0.000202053,0.0003834877,0.0007865326,0.0004073511,0.0001757829,0.0003337882,0.002036195],"category_scores_gemma":[0.0007565871,0.0001270115,0.0001870499,0.0002085251,0.0002466934,0.0002282913,0.0003058183,0.0005153821,0.0002535064],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001421507,"about_ca_system_score_gemma":0.0001496061,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008036956,"about_ca_topic_score_gemma":0.0006436068,"domain_scores_codex":[0.99989,0.00002144472,0.00001313634,0.00002966889,0.00001514854,0.00003059743],"domain_scores_gemma":[0.999575,0.0001208042,0.00006891545,0.00007636121,0.00004435802,0.000114729],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001082415,0.0004800711,0.8426287,0.00005189314,0.00006801062,0.01002287,0.002597357,0.0001883652,0.1197613,0.0004118083,0.000359688,0.02234747],"study_design_scores_gemma":[0.00005369031,0.002679301,0.917448,0.00001784146,0.0001031442,0.05492129,0.001360988,0.0008831605,0.01894925,0.0003141236,0.00323839,0.00003074449],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999332,0.0000596056,0.0002621926,0.00002563986,0.000002554247,0.00000702632,0.00006302063,0.000005203196,0.0002427493],"genre_scores_gemma":[0.9991375,0.00004290299,0.0003002715,0.00004069845,0.000006008262,0.000006018774,0.0001301901,0.000003768616,0.0003326947],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002036195,"threshold_uncertainty_score":0.006811738,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1309195865658904,"score_gpt":0.4201118619583016,"score_spread":0.2891922753924112,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}