{"id":"W2062990918","doi":"10.1128/aem.00363-09","title":"Long-Term Survival of <i>Salmonella enterica</i> Serovar Typhimurium Reveals an Infectious State That Is Underrepresented on Laboratory Media Containing Bile Salts","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; University of British Columbia","funders":"","keywords":"Infectivity; Salmonella enterica; Salmonella; Serotype; Microbiology; Biology; Enterobacteriaceae; Virology; Bacteria; Escherichia coli; Biochemistry; Gene; Virus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001320632,0.0002254762,0.0002978845,0.00004609682,0.00007728783,0.00001138121,0.0001353878,0.0001413029,0.00002670281],"category_scores_gemma":[0.00000765508,0.0002070099,0.00004383143,0.00004216331,0.00032221,0.000005823221,0.0001751447,0.0001138127,0.00001000822],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002656893,"about_ca_system_score_gemma":0.0000141327,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008431619,"about_ca_topic_score_gemma":0.00001321853,"domain_scores_codex":[0.9988078,0.0001007799,0.0002099485,0.0004849532,0.00006242446,0.0003340592],"domain_scores_gemma":[0.9994439,0.00003100575,0.0001149011,0.000303702,0.000008572311,0.00009789125],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003274713,0.0001734057,0.04964117,0.00001148247,0.00009485851,0.000005478842,0.0001585006,0.000003855652,0.9482839,0.000005608274,0.0001184471,0.001175782],"study_design_scores_gemma":[0.001325507,0.001257856,0.2776368,0.00001164303,0.00002036913,0.00001726067,0.0002185222,8.345984e-7,0.7187075,0.00004889685,0.0004989273,0.0002558478],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986497,0.0003561523,0.00003147957,0.00006296378,0.00007982359,0.0002362119,0.0003529173,0.0000132151,0.0002175752],"genre_scores_gemma":[0.9973461,0.001180976,0.0000325195,0.0006261127,0.00006504787,0.00001253098,0.0006855016,0.00002042019,0.00003076981],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2295764,"threshold_uncertainty_score":0.8441618,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01035352902402203,"score_gpt":0.2356079819636605,"score_spread":0.2252544529396384,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}