{"id":"W2063049561","doi":"10.1128/aem.71.3.1328-1335.2005","title":"Rhizobial 16S rRNA and <i>dnaK</i> Genes: Mosaicism and the Uncertain Phylogenetic Placement of <i>Rhizobium galegae</i>","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Institute of Allergy and Infectious Diseases; Pennsylvania State University; University of Pennsylvania","keywords":"Biology; Mesorhizobium; Agrobacterium; Rhizobium leguminosarum; Phylogenetic tree; Rhizobiaceae; Rhizobium; 16S ribosomal RNA; Rhizobia; Botany; Genetics; Gene; Bacteria; Nitrogen fixation; Symbiosis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004648932,0.0002169673,0.000222322,0.0008712216,0.0001897444,0.0004128172,0.0002563907,0.0002983934,0.0002795839],"category_scores_gemma":[0.000805963,0.0001828571,0.0002247461,0.0004980915,0.000394845,0.0002594727,0.0003507892,0.0002100008,0.0001300388],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003886199,"about_ca_system_score_gemma":0.0002076489,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001775284,"about_ca_topic_score_gemma":0.002119695,"domain_scores_codex":[0.9997464,0.00006939524,0.00001800818,0.00006798963,0.00003915223,0.00005896765],"domain_scores_gemma":[0.9995304,0.000109778,0.0001939402,0.00004748363,0.00005068639,0.0000677339],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008454755,0.00002521124,0.1407694,0.0001445208,0.00007876487,0.000382428,0.0007829993,0.000358667,0.8470927,0.0004455156,0.00002981338,0.009044563],"study_design_scores_gemma":[0.00003124663,0.0003042436,0.9296445,0.00007437494,0.000119253,0.001808777,0.001285303,0.002248223,0.06042355,0.0008587205,0.003172901,0.00002893216],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990051,0.0002469092,0.0004442802,0.00002341169,8.276396e-7,0.000003501902,0.0000696063,0.000004601628,0.0002016991],"genre_scores_gemma":[0.9987916,0.0001095144,0.0008136019,0.00001504643,0.000001525241,0.000004290195,0.0001871354,0.000003488083,0.00007377757],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001775284,"threshold_uncertainty_score":0.003529847,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004251766408302014,"score_gpt":0.1573809179303508,"score_spread":0.1531291515220488,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}