{"id":"W2063108185","doi":"10.1016/j.physa.2006.01.084","title":"Persistency of single-stranded DNA: The interplay between base sequences and base stacking","year":2006,"lang":"en","type":"article","venue":"Physica A Statistical Mechanics and its Applications","topic":"DNA and Nucleic Acid Chemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Stacking; Base (topology); Base pair; DNA; Computational biology; Genetics; Biology; Computer science; Chemistry; Mathematics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005368399,0.0002243028,0.0003430551,0.0007973706,0.0005258028,0.001211892,0.0007175201,0.0007699061,0.001411641],"category_scores_gemma":[0.00266639,0.0003057317,0.0002069636,0.0004604949,0.001537178,0.00193651,0.0006709785,0.0008283297,0.0001354626],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003878947,"about_ca_system_score_gemma":0.0003903974,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000449275,"about_ca_topic_score_gemma":0.000382654,"domain_scores_codex":[0.9998372,0.00002956522,0.000009308521,0.00004879577,0.00004481999,0.00003035137],"domain_scores_gemma":[0.9982197,0.0007380705,0.0004247453,0.0002187718,0.0001227433,0.0002761329],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004282823,0.0002418667,0.01664953,0.0006235626,0.0001247406,0.001112014,0.001158006,0.06929471,0.3455916,0.4902926,0.002396227,0.0720868],"study_design_scores_gemma":[0.0000534246,0.000365288,0.01735971,0.00005518686,0.0000923288,0.0007355199,0.0003723769,0.4401605,0.0448372,0.4917249,0.00409046,0.0001530266],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9463587,0.003039969,0.04510981,0.0008909469,0.0001352182,0.00001608338,0.0000985511,0.0002042394,0.004146382],"genre_scores_gemma":[0.9974625,0.0004234376,0.001272935,0.00004733531,0.0000824095,0.000008374931,0.00003180404,0.00002440776,0.0006467524],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001411641,"threshold_uncertainty_score":0.004722416,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0128121547437127,"score_gpt":0.2590763895134395,"score_spread":0.2462642347697268,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}