{"id":"W2063135470","doi":"10.1002/gcc.20331","title":"Microarray‐based survey of CpG islands identifies concurrent hyper‐ and hypomethylation patterns in tissues derived from patients with breast cancer","year":2006,"lang":"en","type":"article","venue":"Genes Chromosomes and Cancer","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University Health Network","keywords":"Methylation; CpG site; DNA methylation; Epigenetics; Breast cancer; Biology; Bisulfite sequencing; Cancer; Illumina Methylation Assay; Methylated DNA immunoprecipitation; Gene; Cancer research; Genetics; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000990468,0.0001362308,0.0002219691,0.000446925,0.0001701428,0.0001759493,0.00009761165,0.0002369053,0.0007935957],"category_scores_gemma":[0.0004537403,0.0001206568,0.0000882238,0.0004029961,0.0001007043,0.00006583118,0.0001014789,0.0002132191,0.000172031],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001344543,"about_ca_system_score_gemma":0.00007434274,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001142287,"about_ca_topic_score_gemma":0.001331709,"domain_scores_codex":[0.9998749,0.00002263957,0.00001217213,0.00003475443,0.00002961329,0.00002595377],"domain_scores_gemma":[0.9998666,0.00004531178,0.00003315846,0.000009650434,0.00002152612,0.0000237153],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001019946,0.00006762291,0.7311196,0.00006063355,0.00008664664,0.0007749069,0.0004020724,0.0001865621,0.2524823,0.00004583439,0.0004114373,0.01334236],"study_design_scores_gemma":[0.000008056266,0.0001481428,0.9874873,0.000002388793,0.00003134338,0.001646226,0.0001076174,0.0003047691,0.009677444,0.00002674248,0.0005561217,0.000003867702],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998859,0.0002651064,0.0002624855,0.00002712544,0.000002976036,0.000005553051,0.0003189497,0.00001094132,0.0002478084],"genre_scores_gemma":[0.9988577,0.0001048206,0.0002505568,0.00002409548,0.00000412583,0.00001000798,0.0005370502,0.000002464228,0.0002091549],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001142287,"threshold_uncertainty_score":0.00265485,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0092090528135895,"score_gpt":0.2451774250179632,"score_spread":0.2359683722043737,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}