{"id":"W2063168105","doi":"10.1128/genomea.00930-13","title":"Draft Genome Sequence of <i>Nitrosospira</i> sp. Strain APG3, a Psychrotolerant Ammonia-Oxidizing Bacterium Isolated from Sandy Lake Sediment","year":2013,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"University of Washington; National Science Foundation","keywords":"Biology; Strain (injury); Bacteria; Sediment; Whole genome sequencing; Oxidizing agent; Microbiology; Ammonia; Genome; Ecology; Gene; Genetics; Biochemistry; Chemistry; Anatomy; Paleontology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002693745,0.0003270101,0.0004337381,0.00005044431,0.0002875228,0.0000405971,0.0007537418,0.0001834071,0.03093003],"category_scores_gemma":[0.000007435806,0.0003226628,0.0001031475,0.0002552231,0.000383119,0.0003317497,0.0005011293,0.0003317781,0.002930918],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001646282,"about_ca_system_score_gemma":0.00003012421,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002274379,"about_ca_topic_score_gemma":0.001199871,"domain_scores_codex":[0.9977689,0.0002301842,0.0005953939,0.0005071943,0.0002437187,0.0006545534],"domain_scores_gemma":[0.9987803,0.00004512488,0.0003046578,0.0006708578,0.00003902771,0.000160107],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006851134,0.000276624,0.005036136,0.00001529563,0.0000871077,0.000006135902,0.001291095,0.0002263965,0.9919179,0.000003453747,0.0007656717,0.0003056781],"study_design_scores_gemma":[0.005565173,0.002797812,0.5695178,0.0001307056,0.0001759084,0.00002928137,0.0008150993,0.000747999,0.01294133,0.00345701,0.4015872,0.002234698],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950395,0.0000788567,0.0001985613,0.000193092,0.0002895727,0.0008925077,0.001763347,0.00004000816,0.001504503],"genre_scores_gemma":[0.9931826,0.00006929354,0.001803445,0.001794646,0.00006870865,0.0000964921,0.002520909,0.00002614918,0.0004377466],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9789765,"threshold_uncertainty_score":0.9999225,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01806616183190834,"score_gpt":0.2299169077233022,"score_spread":0.2118507458913939,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}