{"id":"W2063316185","doi":"10.1073/pnas.071380898","title":"Covalent intermediate trapped in 2-keto-3-deoxy-6- phosphogluconate (KDPG) aldolase structure at 1.95-Å resolution","year":2001,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Amino Acid Enzymes and Metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Light Source (Canada); Université de Montréal; University of Saskatchewan","funders":"","keywords":"Chemistry; Aldolase A; Nucleophile; Protonation; Covalent bond; Stereochemistry; Hydrogen bond; Active site; Schiff base; Adduct; Glyceraldehyde; Molecule; Catalysis; Enzyme; Organic chemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005540883,0.0001093774,0.0001366394,0.00007789497,0.00009335124,0.000009859553,0.0005137865,0.0001369443,0.00002173733],"category_scores_gemma":[0.0002115027,0.00007753923,0.00007660383,0.0003445754,0.0004957342,0.00002504288,0.0001994537,0.0001205042,8.234655e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000278757,"about_ca_system_score_gemma":0.00003019086,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008537982,"about_ca_topic_score_gemma":0.000001510995,"domain_scores_codex":[0.9987232,0.000008129135,0.0002903906,0.0002794122,0.0005071107,0.0001917394],"domain_scores_gemma":[0.9995331,0.0000130839,0.0002710025,0.00001335505,0.0001300284,0.00003947267],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009270252,0.00002785648,0.01158435,0.0000206266,0.00001038729,2.101194e-8,0.00007263167,0.0001572066,0.984086,0.001853707,0.001461791,0.0006326936],"study_design_scores_gemma":[0.0004244042,0.00005528685,0.1610822,0.00003805912,0.000008771898,0.00001781073,0.00007833332,0.0004911505,0.8275608,0.00317464,0.006965203,0.0001033068],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966613,0.001410247,0.000001785996,0.0006806916,0.00004448149,0.0001408107,0.00002913852,0.000003658251,0.001027851],"genre_scores_gemma":[0.9981086,0.0007520991,0.0003012317,0.0003243514,0.0001097539,0.000006120453,0.000001738363,0.000005121865,0.0003910127],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1565252,"threshold_uncertainty_score":0.3161958,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01935459218056996,"score_gpt":0.2763011627997332,"score_spread":0.2569465706191632,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}