{"id":"W2063639137","doi":"10.1371/journal.ppat.1000178","title":"The Core and Accessory Genomes of Burkholderia pseudomallei: Implications for Human Melioidosis","year":2008,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Health Sciences Centre; South Health Campus","funders":"Wellcome Trust","keywords":"Burkholderia pseudomallei; Melioidosis; Biology; Genome; Gene; Virulence; Genetics; Comparative genomics; Burkholderia; Bacterial genome size; Metagenomics; Microbiology; Genomics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001411736,0.0001521933,0.0003052667,0.0001084189,0.0008053362,0.00001585973,0.0001105808,0.00009521008,0.00003324564],"category_scores_gemma":[0.0001133386,0.0001103403,0.0001492183,0.0002252856,0.0002462096,0.00005570949,0.00005566624,0.00009542453,0.000003373878],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002689953,"about_ca_system_score_gemma":0.00007128337,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002044555,"about_ca_topic_score_gemma":0.00001598104,"domain_scores_codex":[0.9990121,0.00001938753,0.0003414615,0.0002574957,0.0001168134,0.0002527988],"domain_scores_gemma":[0.9987757,0.0001950812,0.0001440629,0.0004780454,0.0002792238,0.0001279284],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004758028,0.0002785984,0.07573022,0.0001068013,0.0002039463,0.000002417216,0.0003361584,9.410705e-7,0.9157499,0.00335492,0.001766498,0.002422038],"study_design_scores_gemma":[0.002699323,0.0008089697,0.9097445,0.00009491201,0.0008397806,0.0003013587,0.0003887796,0.0000925033,0.06372517,0.001733184,0.0192237,0.0003478459],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951617,0.001172737,0.0002020802,0.001239441,0.00008393513,0.0008967375,0.0001290105,0.00006333755,0.001051089],"genre_scores_gemma":[0.9948792,0.002149357,0.001552854,0.0001310549,0.0001847782,0.0004491797,0.00003795798,0.0000353918,0.0005802062],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8520247,"threshold_uncertainty_score":0.6194077,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1195531617120439,"score_gpt":0.3217384685289247,"score_spread":0.2021853068168808,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}