{"id":"W2063703557","doi":"10.4161/21505594.2014.960726","title":"What is a pathogen? Toward a process view of host-parasite interactions","year":2014,"lang":"en","type":"review","venue":"Virulence","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":175,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"University of Exeter","keywords":"Biology; Host (biology); Pathogen; Virulence; Pathogenicity; Evolutionary biology; Relevance (law); Computational biology; Ecology; Genetics; Microbiology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001540594,0.0003149629,0.0007440983,0.00007642346,0.00004085729,0.00003867417,0.0004260654,0.0002673304,0.0000600686],"category_scores_gemma":[0.00005152386,0.0002761064,0.000396799,0.0001922353,0.00009829859,0.000007990514,0.0001274992,0.0001745939,0.00009990097],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001677243,"about_ca_system_score_gemma":0.000228727,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004348747,"about_ca_topic_score_gemma":0.00001284024,"domain_scores_codex":[0.9984932,0.0001095654,0.0005110867,0.0005095734,0.0001597027,0.0002169015],"domain_scores_gemma":[0.9987513,0.00001833153,0.0003893108,0.0005911152,0.0001616524,0.00008828451],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001014926,0.0001025861,0.00001073098,0.01497863,0.00017452,0.000001953766,0.0001357863,0.000005459175,0.0009983819,0.00004173827,0.000785002,0.9827551],"study_design_scores_gemma":[0.00007369779,0.0001056386,0.000005346948,0.005223367,0.000195547,0.00004346663,0.00003259735,0.00005786363,0.0001570309,0.00002051063,0.9937928,0.0002921462],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001129225,0.9964556,0.002127445,0.00003233897,0.0004324015,0.0003891784,0.0001577379,0.00001121328,0.0002811652],"genre_scores_gemma":[0.0003327065,0.997571,0.0002677407,0.0002521102,0.0001415901,0.0001008833,0.0002617076,0.0000379936,0.001034279],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9930078,"threshold_uncertainty_score":0.9999691,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02556076678129621,"score_gpt":0.3652154772202018,"score_spread":0.3396547104389056,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}