{"id":"W2063998647","doi":"10.1016/j.cbd.2011.03.001","title":"Phylogenetic aspects of carbamoyl phosphate synthetase in lungfish: A transitional enzyme in transitional fishes","year":2011,"lang":"en","type":"article","venue":"Comparative Biochemistry and Physiology Part D Genomics and Proteomics","topic":"Physiological and biochemical adaptations","field":"Environmental Science","cited_by":10,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; National University of Singapore; Appalachian State University; National Science Foundation","keywords":"Lungfish; Biology; Gene isoform; Carbamoyl phosphate synthetase; Clade; Phylogenetic tree; Gene; Biochemistry; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007623065,0.0001513359,0.0002652445,0.00001505781,0.00004769553,0.000003670785,0.00009076115,0.0001053985,0.0001627894],"category_scores_gemma":[0.000005659264,0.0001219509,0.00003806816,0.00009206375,0.0005944555,0.00003582352,0.00005012018,0.0001355543,0.000002911078],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002498829,"about_ca_system_score_gemma":0.00001769611,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005272474,"about_ca_topic_score_gemma":0.00003330512,"domain_scores_codex":[0.9991516,0.00004651445,0.0002446375,0.0003334148,0.00004818919,0.0001755826],"domain_scores_gemma":[0.9997163,0.00005302853,0.0000670716,0.00008329132,0.000008522885,0.00007173551],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002621292,0.000209017,0.001989933,0.00002420593,0.00001152281,0.00000197085,0.0007767351,0.0002019222,0.9961285,0.00028968,0.00001013961,0.00009423278],"study_design_scores_gemma":[0.0004668697,0.00008404305,0.1733353,0.00002006538,0.000008779796,0.000005566627,0.00009896218,0.001319888,0.806542,0.01787283,0.00005588349,0.0001897922],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984754,0.0002299656,0.00002980673,0.00005697408,0.00001291967,0.000196438,0.000135733,0.000003856721,0.0008589525],"genre_scores_gemma":[0.9987988,0.0001082498,0.0008702488,0.00007469302,0.00002027283,0.00004790237,0.0000657077,0.000003426,0.0000106833],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1895865,"threshold_uncertainty_score":0.4973013,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0333127742847097,"score_gpt":0.2231900910673883,"score_spread":0.1898773167826786,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}