{"id":"W2064079765","doi":"10.1186/1471-2180-13-24","title":"Multilocus sequence analysis of Treponema denticolastrains of diverse origin","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of Hong Kong; Agency for Science, Technology and Research; Duke-NUS Medical School","keywords":"Biology; Treponema denticola; Genetics; Phylogenetic tree; Multilocus sequence typing; Treponema; Phylogenetics; Clade; Gene; Sequence analysis; Monophyly; Genotype; Bacteria; Virology","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004387953,0.0003273539,0.0003362412,0.001519244,0.0002992869,0.0005015064,0.0002977262,0.0002957605,0.0005989621],"category_scores_gemma":[0.001334911,0.0001082825,0.0004483066,0.001160517,0.0001834883,0.0001775727,0.0004420865,0.0002976782,0.0002334401],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002785128,"about_ca_system_score_gemma":0.0002405596,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001607365,"about_ca_topic_score_gemma":0.001413028,"domain_scores_codex":[0.999673,0.00003943884,0.00003620976,0.00009438842,0.00010131,0.00005562394],"domain_scores_gemma":[0.9990344,0.0002112444,0.0003155135,0.00004992883,0.0002842528,0.0001046376],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001242376,0.0002426684,0.140366,0.0003622147,0.0002832674,0.0006666518,0.0009174788,0.0007083263,0.8345786,0.000137383,0.0001402896,0.02035468],"study_design_scores_gemma":[0.00006650638,0.00113045,0.8424316,0.00006615802,0.0005432788,0.004463425,0.0009776603,0.004976866,0.1414013,0.0001701684,0.00372478,0.00004780094],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981622,0.0002248052,0.0008911997,0.00001066648,0.000003373787,0.00002055562,0.0004845771,0.00001140506,0.0001912719],"genre_scores_gemma":[0.9945794,0.000125322,0.003322948,0.00001413118,0.000006219358,0.00002095759,0.001800376,0.00001131582,0.0001194244],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001607365,"threshold_uncertainty_score":0.003196001,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06860707152583301,"score_gpt":0.344696574506433,"score_spread":0.2760895029806,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}