{"id":"W2064087380","doi":"10.1186/s12862-014-0162-7","title":"Motif types, motif locations and base composition patterns around the RNA polyadenylation site in microorganisms, plants and animals","year":2014,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of New Brunswick; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Canadian Food Inspection Agency","keywords":"Biology; Polyadenylation; Protist; RNA; Genetics; Base pair; Phylum; Globodera pallida; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001447668,0.000180201,0.0002210884,0.00101376,0.0002853367,0.0003066457,0.0001158688,0.0002666614,0.001165645],"category_scores_gemma":[0.0003644379,0.0001259133,0.0002978008,0.000754872,0.0001686343,0.0002000459,0.0001906066,0.0001785294,0.0005192947],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001318301,"about_ca_system_score_gemma":0.0001249817,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006739615,"about_ca_topic_score_gemma":0.001177324,"domain_scores_codex":[0.9998623,0.00001252807,0.00001460622,0.00007181805,0.00001534399,0.0000232983],"domain_scores_gemma":[0.9995968,0.00009387654,0.0001585607,0.00002611765,0.00004487297,0.00007966955],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009278473,0.00004773323,0.1482675,0.0005413577,0.0001757496,0.0001892376,0.0003906522,0.0004294565,0.8279797,0.0001629917,0.0001562896,0.02073143],"study_design_scores_gemma":[0.00001309755,0.0002471007,0.9483641,0.00004238871,0.0001723296,0.001146074,0.0002320196,0.001412339,0.04442596,0.0001937315,0.003724855,0.0000259583],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960095,0.001098513,0.001063014,0.00000822258,0.000003919264,0.00001002961,0.001262514,0.00003565307,0.0005086845],"genre_scores_gemma":[0.9924824,0.0003571578,0.003789966,0.00002023958,0.000006140225,0.00002529388,0.002934287,0.00001484805,0.0003696839],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001165645,"threshold_uncertainty_score":0.003899515,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01161604624317213,"score_gpt":0.2509395506269721,"score_spread":0.2393235043838,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}