{"id":"W2064087380","doi":"10.1186/s12862-014-0162-7","title":"Motif types, motif locations and base composition patterns around the RNA polyadenylation site in microorganisms, plants and animals","year":2014,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of New Brunswick; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Canadian Food Inspection Agency","keywords":"Biology; Polyadenylation; Protist; RNA; Genetics; Base pair; Phylum; Globodera pallida; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001985647,0.0000978654,0.00009387652,0.00005953221,0.0001519306,0.00001725761,0.00007690165,0.0001216352,0.000009890822],"category_scores_gemma":[0.00005029285,0.00007930634,0.00001754134,0.00004643136,0.0001272018,0.000006650079,0.00009154445,0.0000860777,0.000007563197],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001854977,"about_ca_system_score_gemma":0.00003607317,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002782148,"about_ca_topic_score_gemma":0.0003718046,"domain_scores_codex":[0.9991311,0.0002118957,0.0001485515,0.0002663015,0.00004751795,0.0001945834],"domain_scores_gemma":[0.9996389,0.00006494529,0.00004594831,0.0001619083,0.00003318276,0.00005508801],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004824862,0.00001987678,0.3022662,0.00001021302,0.000007717837,4.497987e-7,0.00002093754,0.00004259633,0.6966318,0.0003279054,0.0001137232,0.0005102659],"study_design_scores_gemma":[0.0006052345,0.0002549235,0.9730487,0.00001839738,0.000006505956,0.00007774129,0.00009112488,0.00805173,0.01638933,0.0005176482,0.0007972437,0.0001414211],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9890848,0.001611977,0.008484551,0.0004840782,0.00003796803,0.0001661732,0.00007299199,0.000007047558,0.00005045811],"genre_scores_gemma":[0.9983039,0.000269269,0.0005113134,0.0001545762,0.0001417866,0.00001267655,0.0005086955,0.000008593951,0.00008920705],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6802425,"threshold_uncertainty_score":0.3234019,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01161604624317213,"score_gpt":0.2509395506269721,"score_spread":0.2393235043838,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}