{"id":"W2064143767","doi":"10.1371/journal.pone.0103852","title":"Genomic Characterization of a Large Outbreak of Legionella pneumophila Serogroup 1 Strains in Quebec City, 2012","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Université de Montréal; Centre Hospitalier de l’Université de Montréal; McGill University; Institut de Recherche Robert-Sauvé en Santé et en Sécurité du Travail; Institut National de Santé Publique du Québec","funders":"Natural Sciences and Engineering Research Council of Canada; Institut National de Santé Publique du Québec","keywords":"Outbreak; Legionella pneumophila; Typing; Pulsed-field gel electrophoresis; Microbiology; Biology; Virology; Legionella; Serotype; Legionnaires' disease; Multilocus sequence typing; Molecular epidemiology; Plasmid; Strain (injury); Genotype; Bacteria; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002509606,0.0004552708,0.0003076246,0.001180048,0.001295275,0.0008093652,0.0003969239,0.0004492397,0.001275316],"category_scores_gemma":[0.0009441579,0.0001771437,0.0002843376,0.00253917,0.0003730573,0.0001559627,0.0002965901,0.0005440681,0.0002298878],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.007632835,"about_ca_system_score_gemma":0.005720049,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9157016,"about_ca_topic_score_gemma":0.945418,"domain_scores_codex":[0.9996847,0.00001770711,0.0000109868,0.0001009162,0.0000981903,0.00008751677],"domain_scores_gemma":[0.9992274,0.00005839345,0.0001300029,0.00002423343,0.0004115279,0.0001485031],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009028057,0.0002624668,0.7413346,0.0003099721,0.0001986595,0.003218632,0.003762777,0.002595057,0.2074523,0.0002765888,0.008212992,0.0314731],"study_design_scores_gemma":[0.0000103007,0.00006661395,0.9933113,0.00001907268,0.00002246672,0.0002653446,0.000662461,0.0007148587,0.001690728,0.00001008861,0.00321429,0.00001250717],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9825241,0.0004822423,0.0006744836,0.0002901801,0.00001713148,0.0001493391,0.01381061,0.00003850108,0.002013375],"genre_scores_gemma":[0.97544,0.0003939669,0.001666809,0.0003285293,0.00001684444,0.00005682348,0.01993335,0.0000215627,0.002142109],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08429837,"threshold_uncertainty_score":0.1695896,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02505815969425074,"score_gpt":0.2469761774452297,"score_spread":0.221918017750979,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}