{"id":"W2064143767","doi":"10.1371/journal.pone.0103852","title":"Genomic Characterization of a Large Outbreak of Legionella pneumophila Serogroup 1 Strains in Quebec City, 2012","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Université de Montréal; Centre Hospitalier de l’Université de Montréal; McGill University; Institut de Recherche Robert-Sauvé en Santé et en Sécurité du Travail; Institut National de Santé Publique du Québec","funders":"Natural Sciences and Engineering Research Council of Canada; Institut National de Santé Publique du Québec","keywords":"Outbreak; Legionella pneumophila; Typing; Pulsed-field gel electrophoresis; Microbiology; Biology; Virology; Legionella; Serotype; Legionnaires' disease; Multilocus sequence typing; Molecular epidemiology; Plasmid; Strain (injury); Genotype; Bacteria; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002370186,0.0001024095,0.0002232808,0.00008664758,0.00002156516,0.00000808238,0.0001810609,0.0001292388,0.00001556049],"category_scores_gemma":[0.00003566521,0.0001035316,0.00005430885,0.0001071806,0.00006970811,0.000007950266,0.0001267869,0.00008435535,0.000006210236],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001341767,"about_ca_system_score_gemma":0.00006006967,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004823634,"about_ca_topic_score_gemma":0.001464937,"domain_scores_codex":[0.9990373,0.00007051814,0.0002624507,0.0002145978,0.0001869483,0.0002281536],"domain_scores_gemma":[0.9994432,0.000008216169,0.0001184974,0.0002785365,0.00009470537,0.00005683626],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004347936,0.000853126,0.0426716,0.0001108356,0.00005147171,6.668522e-7,0.00009174977,0.000001652193,0.9557489,0.0001824062,0.0000163286,0.0002278246],"study_design_scores_gemma":[0.0007485631,0.0002074704,0.1886824,0.00007105711,0.00001996717,8.951941e-7,0.00002779876,0.0002017142,0.8093315,0.00003609005,0.0005405304,0.0001320313],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987481,0.00006033858,0.0001808412,0.0002102427,0.00001743944,0.0001930127,0.00005513682,0.000004823762,0.000530038],"genre_scores_gemma":[0.9981343,0.0001733038,0.00008392307,0.00006026592,0.0001376032,0.00001112451,0.0002727222,0.00001782937,0.0011089],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1464174,"threshold_uncertainty_score":0.4221896,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02505815969425074,"score_gpt":0.2469761774452297,"score_spread":0.221918017750979,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}