{"id":"W2064710711","doi":"10.1371/journal.pone.0040064","title":"High Confidence Prediction of Essential Genes in Burkholderia Cenocepacia","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"European Commission; Cystic Fibrosis Canada","keywords":"Biology; Burkholderia cenocepacia; Gene; Genetics; Genome; Organism; Computational biology; Model organism; Burkholderia; In silico; Bacteria; Virulence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001366907,0.0007703273,0.0007079051,0.001538393,0.000577753,0.0009341108,0.0004679693,0.0007677814,0.001596946],"category_scores_gemma":[0.004497229,0.0001789766,0.0008073609,0.0007363271,0.000253014,0.0003513661,0.0005415956,0.0007605369,0.0007851151],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005502659,"about_ca_system_score_gemma":0.0009726551,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002204112,"about_ca_topic_score_gemma":0.002285202,"domain_scores_codex":[0.9993229,0.000137817,0.00006221236,0.0002358658,0.0001538646,0.00008736637],"domain_scores_gemma":[0.9964402,0.002555188,0.0002894933,0.0001187097,0.0003861614,0.0002102097],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.005836845,0.001373049,0.4431622,0.00167041,0.0008396219,0.002779205,0.0002151322,0.132343,0.2849456,0.001841761,0.007007528,0.1179857],"study_design_scores_gemma":[0.0003144828,0.001018947,0.1635599,0.0001071509,0.0004222661,0.001965279,0.0002526396,0.7650304,0.05632321,0.004208825,0.006726827,0.00007002412],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9371206,0.001726973,0.04976431,0.0003179545,0.00005328172,0.00008671643,0.008667617,0.001324167,0.0009382629],"genre_scores_gemma":[0.9483861,0.0002603368,0.03026351,0.0001031593,0.00002751847,0.00006087409,0.02048771,0.00007147761,0.0003393311],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002204112,"threshold_uncertainty_score":0.00722903,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02009619606441719,"score_gpt":0.2104169215140209,"score_spread":0.1903207254496037,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}