{"id":"W2064710711","doi":"10.1371/journal.pone.0040064","title":"High Confidence Prediction of Essential Genes in Burkholderia Cenocepacia","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"European Commission; Cystic Fibrosis Canada","keywords":"Biology; Burkholderia cenocepacia; Gene; Genetics; Genome; Organism; Computational biology; Model organism; Burkholderia; In silico; Bacteria; Virulence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009519148,0.0000834948,0.0001416079,0.00004180376,0.00001585521,0.000004861999,0.0001069894,0.0002279469,0.00004802295],"category_scores_gemma":[0.00003091523,0.0000846925,0.00002535078,0.00007021817,0.00007683215,0.000003059926,0.00007857578,0.00005611272,0.000005365124],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005620716,"about_ca_system_score_gemma":0.00002039456,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004386742,"about_ca_topic_score_gemma":0.00001833341,"domain_scores_codex":[0.9993499,0.00002511206,0.0001850503,0.0001520845,0.00008950382,0.0001983668],"domain_scores_gemma":[0.9996289,0.000003126645,0.00006919109,0.0002089885,0.00005013224,0.00003968613],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004191134,0.0004366776,0.01328499,0.00002743457,0.00004747248,2.608889e-7,0.0000167335,0.000001214111,0.9855936,0.0002382751,0.00002604816,0.0002854474],"study_design_scores_gemma":[0.0002767152,0.0001705789,0.02327527,0.0000219861,0.00002656643,0.000001720659,0.00001455492,0.000008913634,0.9757257,0.00005466907,0.00034853,0.00007482016],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986289,0.000795393,0.00008785658,0.00007708831,0.00014759,0.0001217221,0.00004489303,0.000009082903,0.00008743895],"genre_scores_gemma":[0.9973007,0.0007006577,0.001434851,0.00002349084,0.0003680072,0.00001118582,0.00007875497,0.00001054002,0.0000718538],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009990277,"threshold_uncertainty_score":0.345366,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02009619606441719,"score_gpt":0.2104169215140209,"score_spread":0.1903207254496037,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}