{"id":"W2064712921","doi":"10.1093/nar/gkq939","title":"CPLA 1.0: an integrated database of protein lysine acetylation","year":2010,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Histone Deacetylase Inhibitors Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre","funders":"National Key Research and Development Program of China; Chinese Academy of Sciences; National Natural Science Foundation of China","keywords":"Acetylation; Lysine; Histone; Biology; Histone Acetyltransferases; Biochemistry; Bromodomain; P300-CBP Transcription Factors; Database; Computational biology; Amino acid; Gene; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002195012,0.0001610454,0.0001809316,0.0003071181,0.0001944464,0.00004778086,0.0006456932,0.0003150382,0.0004656198],"category_scores_gemma":[0.001330807,0.0001497749,0.00006771557,0.000644403,0.0006490895,0.00002332809,0.000363112,0.0009781925,0.0001203809],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003799053,"about_ca_system_score_gemma":0.000431462,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002948769,"about_ca_topic_score_gemma":0.0003889904,"domain_scores_codex":[0.9972579,0.0004191088,0.0003117299,0.0005554135,0.0009075371,0.000548334],"domain_scores_gemma":[0.9974462,0.00003221783,0.00006224711,0.00118658,0.001008702,0.0002640476],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002720902,0.0002352758,0.0003572082,0.00004182745,0.00001868094,0.000007547096,0.00007447512,0.000005053415,0.9878478,0.0002654655,0.002546921,0.008327643],"study_design_scores_gemma":[0.0005587135,0.000605908,0.0005011734,0.0000286472,0.000003014296,0.0000110343,0.0001453521,0.0007839115,0.9441538,0.00003827785,0.05301595,0.0001542209],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961644,0.00007376415,0.0004192966,0.0002006219,0.00007382004,0.0005852539,0.0001021527,0.00002311978,0.002357594],"genre_scores_gemma":[0.9919758,0.00002420445,0.004153901,0.00001245234,0.0003217585,0.00007336585,0.0007759805,0.0000532046,0.002609318],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05046903,"threshold_uncertainty_score":0.6107642,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03221501557103177,"score_gpt":0.3580756470991908,"score_spread":0.325860631528159,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}