{"id":"W2064753411","doi":"10.1186/1756-0500-2-254","title":"Evidence of the adaptive evolution of immune genes in chicken","year":2009,"lang":"en","type":"article","venue":"BMC Research Notes","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Trinity College","funders":"Food Institutional Research Measure","keywords":"Nonsynonymous substitution; Biology; Zebra finch; Gene; Genetics; Evolutionary biology; Genome; Lineage (genetic); Most recent common ancestor; Phylogenetic tree; Molecular evolution; Negative selection","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003168886,0.0001291224,0.0001890307,0.001041659,0.0003461072,0.0002823356,0.0002506966,0.0003324305,0.000696944],"category_scores_gemma":[0.0006499109,0.0001634714,0.0001944715,0.000483459,0.0006992415,0.0001581636,0.0003421522,0.0003371723,0.0001187689],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003064046,"about_ca_system_score_gemma":0.0001620379,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001658134,"about_ca_topic_score_gemma":0.002585638,"domain_scores_codex":[0.999755,0.00004567051,0.00001892198,0.00009711363,0.00004859033,0.00003472121],"domain_scores_gemma":[0.9994789,0.000198421,0.0001060759,0.00006123567,0.0000857527,0.00006967219],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005004641,0.00006184325,0.2488835,0.0001114023,0.0001476634,0.0006107774,0.00109604,0.001153126,0.7310207,0.001104013,0.0000660456,0.01524443],"study_design_scores_gemma":[0.00001871771,0.0001546234,0.9880531,0.00001576881,0.0000369214,0.0005998622,0.0003141281,0.001234358,0.008399206,0.0004394972,0.0007208864,0.00001301108],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999252,0.00009030794,0.0002079236,0.0000160789,0.000001301153,0.000001331432,0.00002451527,0.000002600287,0.0004039006],"genre_scores_gemma":[0.9993456,0.00007160795,0.0003474453,0.00002329828,0.000003916291,0.000002309655,0.000076239,0.000003016001,0.0001266823],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001658134,"threshold_uncertainty_score":0.003296971,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1338845200117455,"score_gpt":0.3686958553935387,"score_spread":0.2348113353817932,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}