{"id":"W2065091966","doi":"10.1089/aid.2008.0179","title":"High Prevalence of Genetically Similar HIV-1 Recombinants among Infected Sex Workers in Nairobi, Kenya","year":2008,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Clade; Biology; Virology; Virus; Genetic diversity; Human immunodeficiency virus (HIV); Recombination; Lentivirus; Recombinant DNA; Sequence analysis; Genetics; Viral disease; Phylogenetics; Gene; Medicine; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000724696,0.0002038633,0.0004036014,0.0005920068,0.0004551906,0.00002168298,0.0003501556,0.0002371495,0.00105362],"category_scores_gemma":[0.0003498439,0.0001726001,0.00006427259,0.0004413045,0.002295124,0.0001320226,0.0002745206,0.0007245596,0.0002918506],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008881988,"about_ca_system_score_gemma":0.0001900177,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001962706,"about_ca_topic_score_gemma":0.000363183,"domain_scores_codex":[0.9972071,0.0006942438,0.0004044115,0.0004925301,0.000214987,0.0009867045],"domain_scores_gemma":[0.9986886,0.0004766303,0.00006388409,0.0004364145,0.0002035789,0.0001308576],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002156002,0.0005504523,0.9739176,0.0001053387,0.0001216612,0.0001195465,0.0003131203,0.000001338193,0.02054727,0.0003304995,0.002876602,0.0009009574],"study_design_scores_gemma":[0.002231303,0.00335166,0.9729703,0.0001261431,0.000009034164,0.00001835284,0.0001192297,1.659975e-7,0.0199715,0.000448551,0.0006046561,0.0001490805],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963143,0.001906893,0.000004445257,0.00003834674,0.00003863984,0.000479724,0.0001010452,0.00003433782,0.001082296],"genre_scores_gemma":[0.9891803,0.001643111,0.00009284941,0.00001017661,0.0000159463,0.0000660947,0.00007308244,0.00002159587,0.008896907],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00781461,"threshold_uncertainty_score":0.9998596,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04559661652969636,"score_gpt":0.3167373448140252,"score_spread":0.2711407282843288,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}