{"id":"W2065214355","doi":"10.1016/j.chom.2015.04.001","title":"Humoral Immunity in the Gut Selectively Targets Phenotypically Virulent Attaching-and-Effacing Bacteria for Intraluminal Elimination","year":2015,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":156,"is_retracted":false,"has_abstract":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"National Heart, Lung, and Blood Institute; National Cancer Institute; National Institutes of Health; Mishima Kaiun Memorial Foundation; University of Michigan; Kanae Foundation for the Promotion of Medical Science; Crohn's and Colitis Foundation; Foundation Mishima Haeundae Memorial Foundation; Japan Society for the Promotion of Science; Crohn's and Colitis Foundation of America; National Institute of Diabetes and Digestive and Kidney Diseases; Bill and Melinda Gates Foundation","keywords":"Virulence; Biology; Microbiology; Pathogen; Citrobacter rodentium; Immune system; Innate immune system; Immunity; Bacteria; Enterobacteriaceae; Virology; Immunology; Escherichia coli; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007513565,0.0001513442,0.0001401472,0.00003624613,0.0001547781,0.00005330544,0.0002338196,0.0000866646,0.000003011641],"category_scores_gemma":[0.0002661678,0.0001214286,0.00004835808,0.00008393023,0.0001049185,0.000008459454,0.0002079489,0.0001885682,0.000003470376],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000504904,"about_ca_system_score_gemma":0.0001007264,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007686322,"about_ca_topic_score_gemma":0.0001181144,"domain_scores_codex":[0.9989341,0.0002041478,0.0001742318,0.0002617145,0.000103877,0.0003218939],"domain_scores_gemma":[0.9994796,0.00004492615,0.00006353881,0.0001845918,0.0001667053,0.00006067128],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00022596,0.0001201399,0.001196395,0.00003737656,0.00001859552,0.000001322612,0.001308766,0.00000525671,0.9951067,0.0000401638,0.001198029,0.0007413101],"study_design_scores_gemma":[0.002695626,0.001534013,0.1348041,0.00003546296,0.00004377819,0.00001747074,0.002528759,0.000316885,0.8193768,0.000170446,0.03797558,0.0005010217],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963282,0.001124126,0.001130765,0.0003993447,0.00006695565,0.0004703338,0.00001868233,0.000007002549,0.0004545785],"genre_scores_gemma":[0.9967154,0.0001052704,0.002491964,0.0002360707,0.0001217919,0.00008432624,0.00007937873,0.000016442,0.0001492999],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1757298,"threshold_uncertainty_score":0.4951716,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02389190086106815,"score_gpt":0.2941071451955208,"score_spread":0.2702152443344527,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}