{"id":"W2065375223","doi":"10.1186/s12879-015-0856-5","title":"Reduction in Pseudomonas aeruginosa sputum density during a cystic fibrosis pulmonary exacerbation does not predict clinical response","year":2015,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; University of Calgary","funders":"Cystic Fibrosis Canada; Health Research Board; Gilead Sciences","keywords":"Cystic fibrosis; Sputum; Pseudomonas aeruginosa; Medical microbiology; Medicine; Exacerbation; Bronchiectasis; Parasitology; Microbiology; Pulmonology; Internal medicine; Pathology; Lung; Immunology; Biology; Bacteria; Tuberculosis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.001068279,0.0002844724,0.0005273237,0.0004500723,0.0001519284,0.00006618866,0.000112568,0.0001617104,0.00005035039],"category_scores_gemma":[0.01051523,0.000238088,0.0002245214,0.0005111445,0.0003030741,0.0004329244,0.0001452086,0.0003780575,0.00008940585],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007256893,"about_ca_system_score_gemma":0.0008239978,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000230644,"about_ca_topic_score_gemma":0.0001290456,"domain_scores_codex":[0.9963075,0.0009396328,0.0007236521,0.0006956598,0.0008074243,0.000526109],"domain_scores_gemma":[0.9972288,0.0009683345,0.0001887452,0.000576348,0.0003160783,0.0007216883],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.03240087,0.00118249,0.9381337,0.0004214241,0.00004414903,0.0002647428,0.0001091818,0.0004762861,0.02533025,0.00001242907,0.0003346979,0.001289832],"study_design_scores_gemma":[0.003996906,0.0009128631,0.9876643,0.0003614256,0.0001452801,0.0004563809,0.000234553,0.001533948,0.003821683,0.0004488847,0.0001627649,0.0002609502],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966564,0.0003899966,0.0004044537,0.0002309157,0.000717483,0.001018551,0.00007065666,0.000375118,0.0001364766],"genre_scores_gemma":[0.9976797,0.00008326358,0.0007625886,0.00003411933,0.0007505422,0.0001691311,0.00007705593,0.00004480714,0.0003988251],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04953071,"threshold_uncertainty_score":0.9978196,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02610392419128451,"score_gpt":0.3258832230591178,"score_spread":0.2997792988678333,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}