{"id":"W2065540788","doi":"10.1128/aem.03864-13","title":"Taxonomic Identification of Commensal Bacteria Associated with the Mucosa and Digesta throughout the Gastrointestinal Tracts of Preweaned Calves","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Animal health and immunology","field":"Veterinary","cited_by":242,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Livestock and Meat Agency","keywords":"Biology; Firmicutes; Prevotella; Bacteroidetes; Microbiology; Cecum; Microbiome; Ileum; Bacteroides; Rumen; Ruminococcus; Intestinal mucosa; Eubacterium; Bacteria; Lactobacillus; Feces; 16S ribosomal RNA; Food science; Ecology; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001902192,0.0001108236,0.0001920164,0.00001302398,0.0001101982,0.000004777206,0.0001000763,0.00005753809,0.00001894982],"category_scores_gemma":[0.000008231769,0.00006398652,0.00001685329,0.00001694877,0.0009009866,0.00002355815,0.00007822551,0.0001151367,0.000004202913],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001717759,"about_ca_system_score_gemma":0.000006302444,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002497776,"about_ca_topic_score_gemma":0.000008438617,"domain_scores_codex":[0.9992988,0.0001121713,0.0002323462,0.0001658353,0.00001873214,0.0001721401],"domain_scores_gemma":[0.9993463,0.0002367861,0.0002524004,0.0001407684,0.000002912269,0.00002081],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005655943,0.00006949578,0.009385084,0.00001260153,0.0000224374,3.037842e-7,0.0002688942,3.893341e-7,0.9887201,0.0003842835,0.00004350804,0.0005272783],"study_design_scores_gemma":[0.0009726604,0.002246753,0.9789947,0.0000172662,0.00004926241,0.0002900685,0.001196063,0.00003339137,0.01498944,0.0000569867,0.001037405,0.0001159856],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991345,0.00007080943,0.0001106295,0.0002098337,0.00001668962,0.0002498021,0.00009435063,0.000006456204,0.0001069512],"genre_scores_gemma":[0.9995629,0.00003077463,0.00007257334,0.0001534664,0.00001158329,0.00001594628,0.0001289765,0.000009035442,0.00001472247],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9737307,"threshold_uncertainty_score":0.3319723,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01359547483242906,"score_gpt":0.23069785042618,"score_spread":0.217102375593751,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}