{"id":"W2065557130","doi":"10.1371/journal.ppat.1000850","title":"Emergence and Pathogenicity of Highly Virulent Cryptococcus gattii Genotypes in the Northwest United States","year":2010,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":336,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council; National Institutes of Health; Broad Institute","keywords":"Cryptococcus gattii; Outbreak; Genotype; Multilocus sequence typing; Biology; Population; Molecular epidemiology; Virulence; Genotyping; Virology; Cryptococcosis; Genetics; Microbiology; Medicine; Gene; Environmental health","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002743411,0.00008238741,0.00007634802,0.0003457344,0.0003442914,0.000311314,0.00009681869,0.000125888,0.0004154157],"category_scores_gemma":[0.0005235451,0.00006174315,0.00004005464,0.000295943,0.000161623,0.0001265041,0.0001938402,0.0001951493,0.0000495382],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005469535,"about_ca_system_score_gemma":0.0004715341,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.05533931,"about_ca_topic_score_gemma":0.1329344,"domain_scores_codex":[0.9998852,0.00002928285,0.000008971449,0.0000190082,0.00003140211,0.00002620833],"domain_scores_gemma":[0.9996656,0.00005184277,0.0001102175,0.00001873766,0.0000824461,0.00007111007],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003236512,0.0001141272,0.9600089,0.00001443737,0.00001708346,0.0007302968,0.0006418637,0.0002172052,0.01554303,0.0001182645,0.0005402136,0.02173088],"study_design_scores_gemma":[0.000008415212,0.0001072559,0.9930114,0.00002469887,0.00001155141,0.0008873914,0.001563462,0.0003868117,0.002924687,0.00006864652,0.0009994532,0.000006199694],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992473,0.0001044595,0.00003987692,0.00004667405,0.000001619019,0.000002554136,0.00005760773,0.000001308109,0.0004986568],"genre_scores_gemma":[0.9994924,0.0001248748,0.0001112234,0.00003471156,9.42432e-7,0.000001331409,0.0001048638,6.331088e-7,0.000128924],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05533931,"threshold_uncertainty_score":0.1100344,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01721926081962782,"score_gpt":0.2551050212788221,"score_spread":0.2378857604591942,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}