{"id":"W2065627587","doi":"10.1016/j.chom.2008.03.008","title":"Mycobacterium tuberculosis Virulence Is Mediated by PtpA Dephosphorylation of Human Vacuolar Protein Sorting 33B","year":2008,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":323,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia","funders":"British Columbia Centre for Disease Control","keywords":"Biology; Vacuolar protein sorting; Protein tyrosine phosphatase; Cell biology; Phagosome; Mycobacterium tuberculosis; Phosphorylation; Lysosome; Immunoprecipitation; Tyrosine phosphorylation; Intracellular; Endosome; Gene; Tuberculosis; Biochemistry; Enzyme","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005131003,0.0002848948,0.0006455874,0.000161944,0.0002244385,0.000009938426,0.0002116467,0.0002884031,0.0007470737],"category_scores_gemma":[0.0003851526,0.0002609483,0.0002045142,0.0003649536,0.0002628012,0.0001427745,0.0001222999,0.0004809536,0.0002647412],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001274155,"about_ca_system_score_gemma":0.0001276667,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001016932,"about_ca_topic_score_gemma":0.00001844264,"domain_scores_codex":[0.99748,0.0001798717,0.000793946,0.0005301774,0.0003242979,0.0006916558],"domain_scores_gemma":[0.9984958,0.0001269272,0.0003001745,0.0005017187,0.0002649851,0.0003103767],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001052769,0.0002502006,0.06296149,0.0002415431,0.00006162365,0.00002984136,0.0004791524,4.111522e-7,0.9160018,0.000004129225,0.01963886,0.0002256521],"study_design_scores_gemma":[0.001114971,0.0004558255,0.04927236,0.0001462029,0.00005532795,0.00004499204,0.00007404411,0.00007950051,0.9414963,0.00001483654,0.007011564,0.0002341079],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937693,0.002615318,0.00006703706,0.001112424,0.00005469178,0.0007402999,0.00008141538,0.00007557035,0.001483883],"genre_scores_gemma":[0.9957714,0.0009129961,0.000548292,0.001066221,0.00009294887,0.00004992091,0.0003350159,0.00005221405,0.00117101],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02549445,"threshold_uncertainty_score":0.9999843,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01784963992617164,"score_gpt":0.2770881611190541,"score_spread":0.2592385211928824,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}