{"id":"W2065664988","doi":"10.1080/07391102.2009.10507289","title":"Sequence Analysis, Structure Prediction, and Functional Validation of<i>phaC1/phaC2</i>Genes of<i>Pseudomonas</i>sp. LDC-25 and Its Importance in Polyhydroxyalkanoate Accumulation","year":2009,"lang":"en","type":"article","venue":"Journal of Biomolecular Structure and Dynamics","topic":"biodegradable polymer synthesis and properties","field":"Materials Science","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Department of Science and Technology, Ministry of Science and Technology, India; Department of Biotechnology, Ministry of Science and Technology, India; Public Health Agency of Canada","keywords":"Polyhydroxyalkanoates; Pseudomonas; Carboxylesterase; Threading (protein sequence); Gene; Homology modeling; Sequence analysis; Biochemistry; Homology (biology); Biology; In vitro; Chemistry; Computational biology; Genetics; Protein structure; Enzyme; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001807857,0.0005131104,0.000360305,0.0002949599,0.000187588,0.0003925188,0.0002596626,0.0003384633,0.0006950006],"category_scores_gemma":[0.0004613532,0.0001088939,0.0006172222,0.0005272952,0.00020851,0.0001880173,0.000143104,0.0004705142,0.0005515048],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004752852,"about_ca_system_score_gemma":0.0004739227,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003451302,"about_ca_topic_score_gemma":0.002329853,"domain_scores_codex":[0.9998134,0.00002740008,0.00001595195,0.00004141434,0.0000732211,0.00002870392],"domain_scores_gemma":[0.9997049,0.00006848255,0.00007065292,0.00002704569,0.00008661531,0.00004223105],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000168086,0.00006710799,0.003260082,0.000125159,0.00001246191,0.0002823483,0.00006225752,0.000837077,0.9898984,0.0001093569,0.0001387883,0.005038931],"study_design_scores_gemma":[0.00003214051,0.0003683429,0.03400939,0.00003938358,0.00007202117,0.00124415,0.0002817256,0.01195196,0.9437276,0.0001465643,0.008091019,0.00003570608],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9864643,0.0008576137,0.0076995,0.0002017038,0.0000283381,0.00007944337,0.003123686,0.0001408326,0.001404667],"genre_scores_gemma":[0.9617186,0.000942949,0.02155107,0.0001116335,0.00001775468,0.00007717329,0.01339338,0.00008902113,0.002098345],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003451302,"threshold_uncertainty_score":0.006862402,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01446493565515541,"score_gpt":0.2430016502961692,"score_spread":0.2285367146410138,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}