{"id":"W2066116844","doi":"10.1093/nar/gki292","title":"Translation of the F protein of hepatitis C virus is initiated at a non-AUG codon in a +1 reading frame relative to the polyprotein","year":2005,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Hepatitis C virus research","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"","keywords":"Frameshift mutation; Open reading frame; Biology; Reading frame; Coding region; Internal ribosome entry site; Stop codon; Start codon; Molecular biology; Genetics; Eukaryotic translation; Luciferase; Shine-Dalgarno sequence; Translation (biology); Ribosome; Messenger RNA; Gene; Peptide sequence; RNA; Transfection; Mutation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002621123,0.0001856002,0.0004415934,0.0006361822,0.0002304995,0.00002375203,0.0005741915,0.0002596418,0.00089588],"category_scores_gemma":[0.001804182,0.000123089,0.0001439356,0.002742171,0.0005304586,0.0002021304,0.0003432987,0.001365831,0.0002568947],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006457908,"about_ca_system_score_gemma":0.0004612986,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01229776,"about_ca_topic_score_gemma":0.007845312,"domain_scores_codex":[0.9948911,0.001004516,0.0007095812,0.0004217998,0.00225897,0.0007140199],"domain_scores_gemma":[0.9976866,0.0004457577,0.0001219424,0.0009104877,0.0006373989,0.0001977691],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001547773,0.0003827707,0.09448656,0.0002654291,0.0001051966,0.00002846852,0.02072704,0.00002825138,0.8115528,0.0005145714,0.001690535,0.06867064],"study_design_scores_gemma":[0.002786953,0.001448829,0.2366498,0.001921102,0.0000235104,0.000009155614,0.0003658811,0.01026328,0.7285507,0.0004570347,0.01728749,0.000236343],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9680005,0.0001594443,0.0001324509,0.01434281,0.0000188788,0.004429663,0.0001059517,0.00001843977,0.01279191],"genre_scores_gemma":[0.9964738,0.0001772205,0.001275128,0.00024447,0.00008244419,0.0003507527,0.000008638065,0.00005574934,0.00133181],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1421632,"threshold_uncertainty_score":0.9942794,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09261244493232912,"score_gpt":0.3885150373046148,"score_spread":0.2959025923722857,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}