{"id":"W2066307121","doi":"10.1016/j.ympev.2008.09.009","title":"Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants","year":2008,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":538,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Nuclear gene; Chloroplast; Mitochondrial DNA; Genome; Gene; Chloroplast DNA; Genetics; Plant evolution; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007671984,0.0001031626,0.0001353628,0.00004891109,0.00007500075,0.000004434164,0.00009149083,0.00009567585,9.982351e-7],"category_scores_gemma":[0.0000352423,0.00008509349,0.00003609545,0.00007929257,0.0002275876,0.000003124389,0.00005589625,0.00005292048,3.160809e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005453132,"about_ca_system_score_gemma":0.00005213465,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004576535,"about_ca_topic_score_gemma":0.00001823135,"domain_scores_codex":[0.9993636,0.00004806219,0.0001806306,0.0001854179,0.00009965605,0.0001226034],"domain_scores_gemma":[0.9996572,0.00001154982,0.00008847881,0.0001603653,0.00005075174,0.00003166319],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006177105,0.00005836682,0.001218145,0.0000227678,0.00002422358,0.00000500906,0.0003421245,0.00007381062,0.9963761,0.001749327,0.000004865581,0.00006351316],"study_design_scores_gemma":[0.0008181135,0.0005754377,0.04291482,0.00003767846,0.00003486305,0.0001660656,0.0005334038,0.0004226568,0.9517878,0.00187759,0.0006398737,0.0001916696],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924664,0.003813792,0.003229225,0.00002882257,0.00003594252,0.0001753478,0.00003356808,0.000001852989,0.0002150511],"genre_scores_gemma":[0.9975145,0.001824538,0.0005753175,0.00002581729,0.00001688706,0.000007965064,0.00001763961,0.000009311345,0.000008057176],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04458824,"threshold_uncertainty_score":0.3470012,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008873722577391933,"score_gpt":0.2138706432612511,"score_spread":0.2049969206838591,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}