{"id":"W2066403046","doi":"10.1094/phyto-05-13-0144-r","title":"Phylogeny of the Genus<i>Synchytrium</i>and the Development of TaqMan PCR Assay for Sensitive Detection of<i>Synchytrium endobioticum</i>in Soil","year":2013,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada; Agriculture and Agri-Food Canada; Canadian Food Inspection Agency","funders":"Agriculture and Agri-Food Canada; Canadian Food Inspection Agency","keywords":"Biology; TaqMan; Ribosomal DNA; Internal transcribed spacer; Polymerase chain reaction; Amplicon; Sporangium; Ribosomal RNA; Molecular biology; Genetics; Phylogenetics; Microbiology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007648363,0.0006409626,0.0004993144,0.0008190513,0.0002552915,0.0006236813,0.0005747012,0.0006437543,0.0008105256],"category_scores_gemma":[0.001185335,0.0005187287,0.0004271102,0.0007951887,0.0003237376,0.0002811433,0.0003472289,0.0006079235,0.0007166052],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003436294,"about_ca_system_score_gemma":0.0004630479,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001038719,"about_ca_topic_score_gemma":0.002302737,"domain_scores_codex":[0.9987285,0.0001835184,0.00009925885,0.000426057,0.0003987091,0.0001639085],"domain_scores_gemma":[0.9993488,0.000128784,0.000242061,0.00004862945,0.0001778998,0.00005385069],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003736374,0.00001800325,0.002696451,0.00005917458,0.000005168911,0.00002540094,0.00005490873,0.000117299,0.9930143,0.0001587356,0.00005918316,0.003753922],"study_design_scores_gemma":[0.00002089618,0.001249893,0.06164061,0.0001084856,0.0000927179,0.0005194395,0.0002425624,0.007620819,0.9096414,0.0002772245,0.01854966,0.00003633923],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8430583,0.003507023,0.13767,0.000301848,0.0001666824,0.0006817406,0.004074011,0.001092876,0.009447415],"genre_scores_gemma":[0.7333097,0.002679207,0.2470776,0.0003403664,0.00007449257,0.001628604,0.007832169,0.0001268005,0.006931053],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001038719,"threshold_uncertainty_score":0.00404489,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007162161195880373,"score_gpt":0.2055056180579691,"score_spread":0.1983434568620887,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}