{"id":"W2066403046","doi":"10.1094/phyto-05-13-0144-r","title":"Phylogeny of the Genus<i>Synchytrium</i>and the Development of TaqMan PCR Assay for Sensitive Detection of<i>Synchytrium endobioticum</i>in Soil","year":2013,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada; Agriculture and Agri-Food Canada; Canadian Food Inspection Agency","funders":"Agriculture and Agri-Food Canada; Canadian Food Inspection Agency","keywords":"Biology; TaqMan; Ribosomal DNA; Internal transcribed spacer; Polymerase chain reaction; Amplicon; Sporangium; Ribosomal RNA; Molecular biology; Genetics; Phylogenetics; Microbiology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004539632,0.0001372341,0.0002955933,0.00004304264,0.00005610527,0.000003358343,0.0001466417,0.000124101,0.000001201624],"category_scores_gemma":[0.0002701408,0.00008833704,0.0001321422,0.0000963818,0.0003120011,0.000003754477,0.000118404,0.00007119546,7.361573e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007652392,"about_ca_system_score_gemma":0.00007720392,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001823252,"about_ca_topic_score_gemma":0.0001439925,"domain_scores_codex":[0.9988792,0.0002177154,0.0003888566,0.0002309168,0.00008497723,0.0001983423],"domain_scores_gemma":[0.9991478,0.0001289655,0.0002684089,0.0002581381,0.0001673824,0.00002932659],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000212336,0.00006458223,0.004246591,0.00008139025,0.00003135103,7.186763e-7,0.0001932086,0.00002340995,0.9913421,0.00009053449,0.0000165492,0.003697224],"study_design_scores_gemma":[0.001011685,0.00009648316,0.133111,0.00002037379,0.00004100612,0.00002362814,0.00009663805,0.0001084955,0.8648893,0.0001466309,0.0003618719,0.00009283604],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955117,0.0007201286,0.002607184,0.0000462583,0.0001582058,0.0005655011,0.0002118966,0.000002583278,0.0001765164],"genre_scores_gemma":[0.9989823,0.00008972958,0.0006334639,0.00009348911,0.00005562878,0.00007643249,0.00002364521,0.00001152953,0.00003380838],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1288644,"threshold_uncertainty_score":0.360228,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007162161195880373,"score_gpt":0.2055056180579691,"score_spread":0.1983434568620887,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}