{"id":"W2066810821","doi":"10.1016/j.jmb.2010.01.065","title":"Two Intramolecular Isopeptide Bonds are Identified in the Crystal Structure of the Streptococcus gordonii SspB C-terminal Domain","year":2010,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"National Institute of Dental and Craniofacial Research; Canadian Swine Health Board","keywords":"Streptococcus gordonii; Chemistry; Porphyromonas gingivalis; Protein structure; Pilus; Bacterial adhesin; Plasma protein binding; Structural biology; Structural motif; Biochemistry; Biology; Biofilm; Bacteria; Escherichia coli; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001357296,0.0005206502,0.000425407,0.0002221733,0.000308281,0.0004632509,0.000443598,0.0006482395,0.002074541],"category_scores_gemma":[0.0002707428,0.0001912078,0.0003571998,0.0003279649,0.0003679575,0.0003227705,0.000417203,0.00109455,0.0005544508],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004233279,"about_ca_system_score_gemma":0.0004473922,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001098313,"about_ca_topic_score_gemma":0.001547751,"domain_scores_codex":[0.9998736,0.000008674281,0.000008385125,0.00003509591,0.00004378876,0.00003048825],"domain_scores_gemma":[0.999763,0.00003481715,0.00006829607,0.00001850296,0.00002311159,0.00009227425],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001307823,0.0003147769,0.007656093,0.0002919039,0.0000941877,0.003126867,0.0002150272,0.001437236,0.9719138,0.002141904,0.001109537,0.01039086],"study_design_scores_gemma":[0.0007241821,0.001169018,0.1105315,0.0001467361,0.0003563006,0.006637764,0.0008993776,0.02479134,0.8284634,0.002154498,0.02395886,0.0001669623],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929724,0.000976014,0.003024922,0.0001619244,0.00006874786,0.00002514369,0.0002825237,0.00005527755,0.002432975],"genre_scores_gemma":[0.9937106,0.0002931124,0.002926092,0.0001635038,0.00001091489,0.00001998292,0.0008854725,0.00001224975,0.001978059],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002074541,"threshold_uncertainty_score":0.006940007,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006875054348587747,"score_gpt":0.2986096683069284,"score_spread":0.2917346139583406,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}