{"id":"W2066810821","doi":"10.1016/j.jmb.2010.01.065","title":"Two Intramolecular Isopeptide Bonds are Identified in the Crystal Structure of the Streptococcus gordonii SspB C-terminal Domain","year":2010,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"National Institute of Dental and Craniofacial Research; Canadian Swine Health Board","keywords":"Streptococcus gordonii; Chemistry; Porphyromonas gingivalis; Protein structure; Pilus; Bacterial adhesin; Plasma protein binding; Structural biology; Structural motif; Biochemistry; Biology; Biofilm; Bacteria; Escherichia coli; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002824218,0.0001770811,0.0003883737,0.0001612877,0.00006326028,0.00001898471,0.0003104031,0.0001726158,0.0001114538],"category_scores_gemma":[0.0001695645,0.00009038312,0.0002919926,0.0002877918,0.0002615432,0.00003667612,0.00006641636,0.0008390766,0.000001474972],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003627233,"about_ca_system_score_gemma":0.0001296458,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005510656,"about_ca_topic_score_gemma":0.0002598502,"domain_scores_codex":[0.9985787,0.0002477841,0.0005597759,0.0001693427,0.0002153019,0.0002291466],"domain_scores_gemma":[0.9987064,0.00006309344,0.0005412871,0.000444305,0.0001719378,0.00007298677],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009000576,0.0002033046,0.1846004,0.00001311178,0.0001576624,0.0004308181,0.0000993392,0.00001421569,0.8125148,0.00110191,0.00007490846,0.0006995803],"study_design_scores_gemma":[0.008672413,0.002107412,0.640503,0.0002668104,0.0005740621,0.008045487,0.0008647344,0.00002209875,0.3174743,0.01749096,0.003685069,0.0002936305],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975209,0.0001536268,0.000362577,0.0008520811,0.0003699534,0.0004130095,0.00002244035,0.000003727111,0.0003016392],"genre_scores_gemma":[0.9985771,0.000006154231,0.000850676,0.0003786114,0.0001436181,0.000007218317,0.000005729244,0.00001397206,0.00001694599],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4950405,"threshold_uncertainty_score":0.3685717,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006875054348587747,"score_gpt":0.2986096683069284,"score_spread":0.2917346139583406,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}