{"id":"W2067298056","doi":"10.1101/gr.133850.111","title":"A vast collection of microbial genes that are toxic to bacteria","year":2012,"lang":"en","type":"article","venue":"Genome Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Basic Energy Sciences; National Institute of Allergy and Infectious Diseases; Office of Science; National Institutes of Health; Azrieli Foundation; Israel Science Foundation; U.S. Department of Energy","keywords":"Biology; Cloning (programming); Gene; Genome; Escherichia coli; Genetics; Computational biology; Molecular cloning; DNA; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005624481,0.0001081855,0.0001509667,0.000184545,0.000104276,0.00002092968,0.0002643922,0.0002685416,0.00009668235],"category_scores_gemma":[0.00006222202,0.0001027185,0.00005838955,0.000318245,0.0001123895,0.000002630258,0.0003890798,0.0001175043,0.00005824836],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003065094,"about_ca_system_score_gemma":0.00007222182,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003498497,"about_ca_topic_score_gemma":0.00005554167,"domain_scores_codex":[0.9987632,0.0001180686,0.000154078,0.0002594543,0.000162692,0.0005425223],"domain_scores_gemma":[0.9992798,0.0000102248,0.0000487318,0.0003719955,0.0001713778,0.0001178993],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001318919,0.00008464454,0.003463716,0.00002271176,0.00002974825,5.048844e-7,0.00005527564,0.000001282394,0.9937114,0.00001765012,0.0009919313,0.001489207],"study_design_scores_gemma":[0.0001373539,0.0003490695,0.03621972,0.000007258403,0.000003677089,0.00001242126,0.00007884952,3.726045e-7,0.8303685,0.000006928404,0.132713,0.0001029178],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976912,0.001018252,0.00009711736,0.0003033791,0.0002623701,0.0002957684,0.00005062232,0.000007522294,0.0002737596],"genre_scores_gemma":[0.9968401,0.0004797553,0.001114804,0.00003908269,0.0005474951,0.00003097354,0.00004184834,0.00002148142,0.0008845131],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.163343,"threshold_uncertainty_score":0.4188739,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05156447332761491,"score_gpt":0.3165263391224395,"score_spread":0.2649618657948246,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}