{"id":"W2067784405","doi":"10.3389/fcimb.2012.00048","title":"Evolutionary blueprint for host- and niche-adaptation in Staphylococcus aureus clonal complex CC30","year":2012,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Staphylococcus aureus; Virulence; Clade; Genome; Genetics; Multilocus sequence typing; Mobile genetic elements; Virology; Microbiology; Gene; Phylogenetic tree; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002975313,0.0002469269,0.0002825015,0.0006510188,0.000467695,0.0005166996,0.0002983052,0.0007454985,0.001319179],"category_scores_gemma":[0.0007507331,0.0001261882,0.0002934749,0.0006594682,0.0002144933,0.0003294261,0.0004891591,0.0003807899,0.0003517227],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004714734,"about_ca_system_score_gemma":0.0003869883,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002792622,"about_ca_topic_score_gemma":0.003842695,"domain_scores_codex":[0.9997962,0.00004052683,0.00001384174,0.00004709219,0.00005240423,0.00004990532],"domain_scores_gemma":[0.9995831,0.00009025864,0.0001072831,0.00004693331,0.00006986323,0.0001026754],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004860274,0.0001437976,0.09436174,0.0001223402,0.0000788699,0.001723221,0.0007302505,0.002703369,0.8816761,0.001408734,0.0003675151,0.01619808],"study_design_scores_gemma":[0.00006502825,0.0006631869,0.928521,0.00007529423,0.00009409033,0.005346105,0.001598338,0.02412022,0.02945305,0.001994033,0.007972244,0.00009743667],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998002,0.0001328466,0.0008293155,0.00004193688,0.000003010148,0.00001389731,0.0001917427,0.00002842566,0.0007568588],"genre_scores_gemma":[0.9982443,0.00007322907,0.00108487,0.00005602291,0.000002765548,0.000009987597,0.0003557421,0.00001686752,0.000156207],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002792622,"threshold_uncertainty_score":0.005552709,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02063965327513823,"score_gpt":0.2594466299458085,"score_spread":0.2388069766706702,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}