{"id":"W2068524813","doi":"10.1371/journal.pgen.1004029","title":"The PAF Complex and Prf1/Rtf1 Delineate Distinct Cdk9-Dependent Pathways Regulating Transcription Elongation in Fission Yeast","year":2013,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Elongation factor; RNA polymerase II; Biology; Schizosaccharomyces; Histone; Cell biology; Chromatin; Chromatin immunoprecipitation; Schizosaccharomyces pombe; Cyclin-dependent kinase 9; Transcription factor; Histone H2B; P-TEFb; Transcription (linguistics); Transcriptional regulation; Kinase; Yeast; Genetics; Protein kinase A; RNA; Gene expression; Saccharomyces cerevisiae; Gene; Promoter; Cyclin-dependent kinase 2; Ribosome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001046159,0.0003174831,0.0002367165,0.0002426066,0.000220984,0.0004861078,0.0002683759,0.0002885726,0.0004311146],"category_scores_gemma":[0.0001296481,0.0002944446,0.0003007861,0.0001265857,0.0003024588,0.0003527712,0.0003437924,0.0003188876,0.0003365876],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007678446,"about_ca_system_score_gemma":0.0002389325,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001663133,"about_ca_topic_score_gemma":0.002137366,"domain_scores_codex":[0.9999076,0.0000076944,0.000007385793,0.00003133879,0.00002351877,0.00002242407],"domain_scores_gemma":[0.999905,0.00001211413,0.00003260481,0.00001091046,0.000009041397,0.00003022313],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002041075,0.000008329701,0.0006859946,0.00002379219,0.000003349111,0.00007762037,0.00002204314,0.000259231,0.9958351,0.0009038236,0.00001940041,0.001957244],"study_design_scores_gemma":[0.00004426432,0.0001447471,0.03431583,0.00001127108,0.00001949835,0.0009144375,0.00007541279,0.004131579,0.955467,0.0007857002,0.004070487,0.00001976362],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9901482,0.001967721,0.006132657,0.00006354461,0.000009300972,0.00001356071,0.0002879659,0.00009077111,0.001286185],"genre_scores_gemma":[0.9935108,0.0005583263,0.004449596,0.00002955485,0.000003105797,0.00001443946,0.0005206775,0.00002811813,0.0008853873],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001663133,"threshold_uncertainty_score":0.005571127,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0177970954109393,"score_gpt":0.210609513598137,"score_spread":0.1928124181871977,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}