{"id":"W2069690238","doi":"10.1139/b99-177","title":"Phylogenetic analysis of the small subunit ribosomal RNA gene of the hyphochytrid <i>Rhizidiomyces apophysatus</i>","year":2000,"lang":"en","type":"article","venue":"Canadian Journal of Botany","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Eye Institute","keywords":"Monophyly; Biology; Phylogenetic tree; Ribosomal RNA; Phylogenetics; 18S ribosomal RNA; Maximum parsimony; Ribosomal DNA; Botany; 28S ribosomal RNA; Evolutionary biology; Taxon; Gene; Genetics; RNA; Ribosome; Clade","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001950458,0.0001213599,0.0002624858,0.00009885929,0.0001405476,0.00001252398,0.0008118022,0.0001100447,0.000155026],"category_scores_gemma":[0.00005101656,0.00008473491,0.000498968,0.000553501,0.0002691286,0.000003343107,0.00003950579,0.000145002,0.000001147557],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002897136,"about_ca_system_score_gemma":0.000689994,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001768971,"about_ca_topic_score_gemma":0.01293891,"domain_scores_codex":[0.999002,0.0001290202,0.0003562826,0.0001248107,0.0001603911,0.0002275172],"domain_scores_gemma":[0.9988278,0.00001349113,0.0003408702,0.0004322265,0.0001873998,0.0001981858],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009320646,0.00003879253,0.2016213,0.00001507938,0.001359862,0.00001576065,0.0002100815,0.00151665,0.7916006,0.00002264423,0.0006199835,0.002886003],"study_design_scores_gemma":[0.000426033,0.0001644041,0.4343511,0.00002852308,0.0008312067,0.00005040773,0.00005862938,0.00001911351,0.5560065,0.0000814436,0.007839987,0.0001426293],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955136,0.003192466,0.0000157376,0.0001793807,0.0001640099,0.00009128945,0.0002156605,5.346213e-7,0.000627282],"genre_scores_gemma":[0.9990115,0.0001536704,0.0001029974,0.0002661294,0.0001100498,6.338674e-7,0.000003654466,0.000008707241,0.0003426222],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2355941,"threshold_uncertainty_score":0.7220217,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007648013955384969,"score_gpt":0.1773806976846174,"score_spread":0.1697326837292324,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}