{"id":"W2070040136","doi":"10.1186/1471-2105-12-436","title":"clusterMaker: a multi-algorithm clustering plugin for Cytoscape","year":2011,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":669,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Center for Research Resources; National Institute of General Medical Sciences; National Institutes of Health","keywords":"Cluster analysis; Computer science; Interactome; Plug-in; Hierarchical clustering; Computational biology; Visualization; Dendrogram; Data mining; Bioinformatics; Biology; Machine learning; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002792338,0.0032162,0.001890031,0.004773441,0.001943694,0.002668996,0.007116656,0.002878002,0.06687146],"category_scores_gemma":[0.009217148,0.002318028,0.002175089,0.002658704,0.0007771382,0.003368896,0.003261485,0.005041406,0.02877718],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001301908,"about_ca_system_score_gemma":0.00474129,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007032656,"about_ca_topic_score_gemma":0.01030028,"domain_scores_codex":[0.9981692,0.0003166468,0.0001351283,0.00046368,0.0007585263,0.0001567127],"domain_scores_gemma":[0.9963129,0.002113836,0.0002207185,0.0004658231,0.0005908947,0.0002959235],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001020228,0.0002512282,0.001717493,0.004435379,0.000994061,0.0006283902,0.000752757,0.01546015,0.01789149,0.01473614,0.7748127,0.1673],"study_design_scores_gemma":[0.0008561639,0.0001653116,0.003379519,0.0006956886,0.0002768142,0.0007202434,0.0001905834,0.1832321,0.05756226,0.07015693,0.6819919,0.0007724399],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.002357919,0.0006602238,0.3182177,0.0005041914,0.0005105864,0.0005648569,0.03313565,0.6389078,0.00514101],"genre_scores_gemma":[0.03342263,0.001151766,0.7388601,0.001540603,0.0003013397,0.006376929,0.0588536,0.14718,0.01231309],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.06687146,"threshold_uncertainty_score":0.2237073,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03728483425002162,"score_gpt":0.2498073105875191,"score_spread":0.2125224763374975,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}