{"id":"W2071141055","doi":"10.1110/ps.0224503","title":"Directing the mode of nitrite binding to a copper‐containing nitrite reductase from <i>Alcaligenes faecalis</i> S‐6: Characterization of an active site isoleucine","year":2003,"lang":"en","type":"article","venue":"Protein Science","topic":"Amino Acid Enzymes and Metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Alcaligenes faecalis; Nitrite reductase; Nitrite; Chemistry; Active site; Heme; Biochemistry; Binding site; Mutagenesis; Stereochemistry; Enzyme; Mutant; Biology; Nitrate reductase; Bacteria; Nitrate; Organic chemistry; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004975548,0.0001312293,0.0001856498,0.00008404702,0.0001867599,0.00002998775,0.0003072146,0.00005895882,0.00000534933],"category_scores_gemma":[0.000452827,0.000102248,0.00004760414,0.0005199678,0.0002104269,0.00003527534,0.0001099739,0.00006989777,0.00000125461],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001259324,"about_ca_system_score_gemma":0.0001275184,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002565477,"about_ca_topic_score_gemma":0.0000214489,"domain_scores_codex":[0.9987181,0.0001020298,0.000269659,0.0004032527,0.0002480785,0.0002588684],"domain_scores_gemma":[0.9990599,0.00001394435,0.0002220491,0.000381284,0.0002183683,0.0001044501],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007301106,0.00003284363,0.0004657722,0.000006388609,0.000007925731,4.46326e-7,0.000822283,0.00004925239,0.9930079,0.00007611409,0.000001424375,0.00545664],"study_design_scores_gemma":[0.000217186,0.0001409706,0.0008925158,0.00004403172,0.00001277219,0.000002773901,0.0004251093,0.0001962331,0.9969555,0.00002957414,0.000957572,0.0001257986],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966118,0.0001490702,0.002355268,0.0000524771,0.00008814145,0.0004098131,0.0001427695,0.000007450814,0.0001831763],"genre_scores_gemma":[0.9966338,0.00002814417,0.002980907,0.0001044728,0.00008769776,0.00003593944,0.00005548545,0.00001249131,0.00006102329],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005330842,"threshold_uncertainty_score":0.4169553,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01110559225001237,"score_gpt":0.2703715901398034,"score_spread":0.259265997889791,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}