{"id":"W2071442384","doi":"10.1186/1471-2164-13-4","title":"Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel","year":2012,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Planarian Biology and Electrostimulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":87,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Institute of Infection and Immunity","funders":"University of Glasgow; Wellcome Trust","keywords":"Biology; Brugia malayi; Haemonchus contortus; Piwi-interacting RNA; microRNA; Brugia pahangi; Genetics; Argonaute; Gene; DNA microarray; Caenorhabditis elegans; Nematode; Genome; Regulation of gene expression; Deep sequencing; RNA interference; Computational biology; Gene expression; Transposable element; RNA; Ecology; Filariasis; Helminths","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002084165,0.00009007206,0.0001235156,0.00002312329,0.0001292154,0.000003970067,0.000106334,0.00013757,0.000002259604],"category_scores_gemma":[0.00003195065,0.00007503262,0.00003486197,0.00003500865,0.00007301749,0.000004136612,0.0001308333,0.00005997812,0.000001979559],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000179142,"about_ca_system_score_gemma":0.00003236207,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006322192,"about_ca_topic_score_gemma":0.000635307,"domain_scores_codex":[0.9994518,0.00003969939,0.000127315,0.0001319205,0.00003121436,0.0002180646],"domain_scores_gemma":[0.9996659,0.00002704952,0.00009256248,0.000150597,0.00002080477,0.00004306217],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000085163,0.00003998581,0.6044295,0.000012303,0.00002305373,4.337089e-7,0.0002937268,0.00006473906,0.3947537,0.00008911133,0.0001565829,0.00005166956],"study_design_scores_gemma":[0.0007203962,0.00005712696,0.9370233,0.000005887307,0.00002997638,0.0000285515,0.0001607275,0.0001109979,0.05850367,0.00005744274,0.003167534,0.0001343818],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950729,0.003377118,0.001130461,0.0001131715,0.00006124618,0.0001341142,0.00004542091,0.000002767976,0.00006281665],"genre_scores_gemma":[0.9991061,0.0001692474,0.0001941139,0.0003303161,0.00007410347,0.000002643911,0.00007617385,0.000005963711,0.00004135288],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.33625,"threshold_uncertainty_score":0.3059742,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02833990261109745,"score_gpt":0.2433496514234606,"score_spread":0.2150097488123632,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}