{"id":"W2071816318","doi":"10.1074/jbc.m114.558536","title":"Molecular Characterization of Quinate and Shikimate Metabolism in Populus trichocarpa","year":2014,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"","keywords":"Shikimate pathway; Biosynthesis; Biochemistry; Aromatic amino acids; Shikimic acid; Dehydratase; Amino acid; Secondary metabolism; Biology; Dehydrogenase; Chemistry; Enzyme","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007365565,0.0003681647,0.0001568256,0.0005090245,0.0001540108,0.0002331836,0.0001546402,0.0001499078,0.0005879774],"category_scores_gemma":[0.0001378833,0.000121539,0.0003552967,0.0003193272,0.000132366,0.000181084,0.0001606405,0.0002577564,0.0003416598],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001935285,"about_ca_system_score_gemma":0.0001794325,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001298508,"about_ca_topic_score_gemma":0.001218743,"domain_scores_codex":[0.9999493,0.000004680448,0.000004075089,0.00001471651,0.0000139628,0.00001321933],"domain_scores_gemma":[0.9998639,0.00002211956,0.00003864078,0.00001211962,0.00002150583,0.00004177694],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002685182,0.000005131049,0.0003212876,0.00001534051,0.000002725402,0.00004494137,0.00001287047,0.00001945404,0.9990717,0.00002478506,0.000004664621,0.0004502155],"study_design_scores_gemma":[0.00002312765,0.0003972592,0.1442991,0.00001168942,0.0001154549,0.001479569,0.00021165,0.00153086,0.8451211,0.0002585328,0.006526203,0.00002543425],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952749,0.0006904137,0.001862713,0.0000727008,0.000004798843,0.00001859215,0.001261019,0.00004650301,0.000768383],"genre_scores_gemma":[0.9873422,0.0008451504,0.002425972,0.00007399717,0.0000128162,0.0000382155,0.00694833,0.00003955906,0.002273849],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001298508,"threshold_uncertainty_score":0.002581835,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007555015701292046,"score_gpt":0.2314299554939034,"score_spread":0.2238749397926113,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}