{"id":"W2071894109","doi":"10.1074/jbc.m110.153981","title":"The Active Site of Oligogalacturonate Lyase Provides Unique Insights into Cytoplasmic Oligogalacturonate β-Elimination","year":2010,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Polysaccharides and Plant Cell Walls","field":"Agricultural and Biological Sciences","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"","keywords":"Pectate lyase; Active site; Yersinia enterocolitica; Biochemistry; Lyase; Enzyme; Enterobacteriaceae; Stereochemistry; Chemistry; Binding site; Biology; Escherichia coli; Bacteria; Gene; Genetics; Pectinase","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006414356,0.0004274281,0.0003239985,0.0001253602,0.0001202994,0.0004911094,0.0004163105,0.0004393348,0.0008619513],"category_scores_gemma":[0.00006865313,0.0001657112,0.0002375866,0.0001765291,0.0001948744,0.0004327637,0.000164885,0.0003916172,0.0005129683],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003294221,"about_ca_system_score_gemma":0.0002060141,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001349461,"about_ca_topic_score_gemma":0.0008779383,"domain_scores_codex":[0.9999592,0.000005217824,0.000001425405,0.0000132244,0.00001081184,0.00001005972],"domain_scores_gemma":[0.999972,0.000003814488,0.000007335459,0.000002967877,0.000004930179,0.000008928874],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001787536,0.00004519155,0.003690131,0.0001899945,0.00001780595,0.00049267,0.0001270133,0.009299651,0.9739257,0.003890493,0.0002606593,0.007881965],"study_design_scores_gemma":[0.0000951088,0.0007459756,0.04162758,0.00008080551,0.00007706818,0.002061695,0.0005970338,0.1529216,0.7588596,0.007899692,0.03495792,0.00007599124],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9711826,0.005093963,0.01957157,0.0003390733,0.00001675672,0.0000112492,0.0002523691,0.0001684196,0.00336389],"genre_scores_gemma":[0.9894231,0.001575614,0.007027685,0.0000399521,0.000008367478,0.000006346444,0.0004377631,0.00001385204,0.001467431],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001349461,"threshold_uncertainty_score":0.002883494,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00914005569915097,"score_gpt":0.2081699885734329,"score_spread":0.1990299328742819,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}