{"id":"W2072177407","doi":"10.1099/ijs.0.63216-0","title":"On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes","year":2005,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":169,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Genome Atlantic; Michael Smith Health Research BC; Genome Canada","keywords":"Biology; Monophyly; Plastid; Phylogenetics; Protist; Lineage (genetic); Evolutionary biology; Gene; Nuclear gene; Genetics; Genome; Clade; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003147823,0.00009009476,0.0002405931,0.00008321321,0.00003785473,0.000004477406,0.000316577,0.00008775185,0.000025685],"category_scores_gemma":[0.0001507092,0.00006122627,0.0001255644,0.00003430801,0.0001753446,0.00000743956,0.00008603386,0.00006914286,0.000002137097],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002288833,"about_ca_system_score_gemma":0.00006279141,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009454096,"about_ca_topic_score_gemma":0.000001785163,"domain_scores_codex":[0.9991193,0.0001395615,0.0004786875,0.00009039325,0.00009127205,0.00008077301],"domain_scores_gemma":[0.9988545,0.00008125963,0.0005960087,0.0001051733,0.000339712,0.00002330219],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001901842,0.00007897125,0.002411419,0.0003570686,0.0003878104,0.000002722504,0.00007618456,0.0003916994,0.9945337,0.001314541,0.0002384959,0.00001718355],"study_design_scores_gemma":[0.003013779,0.002776576,0.0260907,0.007450046,0.0003172819,0.004248013,0.0009367482,0.001261296,0.9483992,0.004513322,0.000472467,0.0005205358],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960451,0.002772301,0.0005589689,0.0002055959,0.0001312542,0.0001665838,0.00006627099,8.390719e-7,0.00005309166],"genre_scores_gemma":[0.9985294,0.00005609874,0.001140925,0.00007991127,0.0001380709,0.000001715206,0.000008564861,0.000004323764,0.00004094633],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04613448,"threshold_uncertainty_score":0.2496735,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01364854633390017,"score_gpt":0.2299553138746379,"score_spread":0.2163067675407378,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}