{"id":"W2072241686","doi":"10.1186/1471-2148-14-153","title":"Mitochondrial and nuclear phylogenetic analysis with Sanger and next-generation sequencing shows that, in Área de Conservación Guanacaste, northwestern Costa Rica, the skipper butterfly named Urbanus belli(family Hesperiidae) comprises three morphologically cryptic species","year":2014,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Lepidoptera: Biology and Taxonomy","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; International Conservation Fund of Canada; Ontario Genomics Institute; Guanacaste Dry Forest Conservation Fund; Ontario Genomics; Forest Conservation Fund; Genome Canada; University of Pennsylvania; Government of Canada; Wege Foundation; National Science Foundation","keywords":"Biology; Species complex; Wolbachia; DNA barcoding; Phylogenetic tree; Evolutionary biology; Mitochondrial DNA; Lineage (genetic); Nymphalidae; Phylogenetics; Zoology; DNA sequencing; Genetics; Lepidoptera genitalia; Ecology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002256127,0.0002959949,0.0003772804,0.0001128297,0.0002349053,0.00004038887,0.0002249812,0.0003481771,0.00003400896],"category_scores_gemma":[0.00006366521,0.0002043791,0.00008889681,0.0001623849,0.0008763402,0.00001478059,0.000170075,0.0001844383,0.000006410567],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004818055,"about_ca_system_score_gemma":0.00008324379,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00035114,"about_ca_topic_score_gemma":0.003214125,"domain_scores_codex":[0.9981261,0.0004253904,0.0003022093,0.0006685817,0.0000752946,0.0004023454],"domain_scores_gemma":[0.9991196,0.000180835,0.0001505806,0.0003832007,0.00007167512,0.00009411824],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003509683,0.00004326369,0.8530332,0.000008085018,0.0001996751,0.000007375174,0.0001040533,0.0005461347,0.144797,0.0001152529,0.00007018857,0.000724802],"study_design_scores_gemma":[0.000937482,0.0008451911,0.9837831,0.00001105069,0.0002005576,0.0001281882,0.0002247086,0.007024258,0.0003668508,0.00009844802,0.006020132,0.000360089],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9809334,0.001900209,0.01587588,0.0003325015,0.00008338662,0.0003638199,0.000048125,0.00001621709,0.0004464242],"genre_scores_gemma":[0.9927234,0.0001802298,0.005193809,0.001218747,0.0003048975,0.00006377431,0.000269898,0.00001628265,0.00002896697],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1444301,"threshold_uncertainty_score":0.8334338,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04618375712037549,"score_gpt":0.2230874683580343,"score_spread":0.1769037112376589,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}