{"id":"W2072241686","doi":"10.1186/1471-2148-14-153","title":"Mitochondrial and nuclear phylogenetic analysis with Sanger and next-generation sequencing shows that, in Área de Conservación Guanacaste, northwestern Costa Rica, the skipper butterfly named Urbanus belli(family Hesperiidae) comprises three morphologically cryptic species","year":2014,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Lepidoptera: Biology and Taxonomy","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; International Conservation Fund of Canada; Ontario Genomics Institute; Guanacaste Dry Forest Conservation Fund; Ontario Genomics; Forest Conservation Fund; Genome Canada; University of Pennsylvania; Government of Canada; Wege Foundation; National Science Foundation","keywords":"Biology; Species complex; Wolbachia; DNA barcoding; Phylogenetic tree; Evolutionary biology; Mitochondrial DNA; Lineage (genetic); Nymphalidae; Phylogenetics; Zoology; DNA sequencing; Genetics; Lepidoptera genitalia; Ecology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003140844,0.0003232836,0.0001650175,0.0005812246,0.000354345,0.0003785316,0.0001632938,0.0002464449,0.0008414809],"category_scores_gemma":[0.0005074343,0.00009471834,0.0002252069,0.000659576,0.0003454934,0.0001566746,0.0002891322,0.0001877775,0.0004152325],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003452575,"about_ca_system_score_gemma":0.0003407869,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00409544,"about_ca_topic_score_gemma":0.01426288,"domain_scores_codex":[0.9997862,0.00003336514,0.00001304431,0.00009497305,0.0000522357,0.00002034313],"domain_scores_gemma":[0.9994906,0.00006976529,0.0002332965,0.00006771726,0.00009413605,0.00004440146],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003205852,0.00006300367,0.309978,0.0004436523,0.0001510153,0.0002677509,0.002179665,0.001147826,0.6230941,0.0008261991,0.0004497213,0.06107842],"study_design_scores_gemma":[0.00001310933,0.0001719994,0.9460256,0.00007096845,0.0001068137,0.0006071675,0.0007954653,0.004969326,0.03656301,0.0004461556,0.01021194,0.00001845069],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9870929,0.000599628,0.007528716,0.00006858381,0.000008842332,0.00003068457,0.001808658,0.00007819739,0.002783734],"genre_scores_gemma":[0.9834029,0.0002808473,0.01204809,0.00007678238,0.00000666954,0.00004432281,0.003053548,0.00001783363,0.00106889],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00409544,"threshold_uncertainty_score":0.008143187,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04618375712037549,"score_gpt":0.2230874683580343,"score_spread":0.1769037112376589,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}