{"id":"W2072601542","doi":"10.1016/s1055-7903(03)00177-5","title":"Protein phylogenies robustly resolve the deep-level relationships within Euglenozoa","year":2003,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":false,"ca_institutions":"Canadian Institute for Advanced Research; Dalhousie University","funders":"","keywords":"Biology; Clade; Phylogenetic tree; Ribosomal RNA; Ribosomal protein; Phylogenetics; Evolutionary biology; Genetics; Gene; Ribosome; RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005371849,0.0002351328,0.0001394966,0.000055015,0.0005684885,0.00005653668,0.0002278746,0.000245549,0.000007324676],"category_scores_gemma":[0.0002517113,0.0002060421,0.0001035103,0.000180014,0.0002611238,0.000004962755,0.0001298309,0.0002285603,0.00001297764],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002667278,"about_ca_system_score_gemma":0.00009087691,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002124389,"about_ca_topic_score_gemma":0.00008598783,"domain_scores_codex":[0.9983734,0.0003936753,0.0002395056,0.0004481472,0.0002171884,0.0003280072],"domain_scores_gemma":[0.9991328,0.00001444695,0.0001201484,0.0004861237,0.0001347548,0.0001117887],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006995061,0.00008090313,0.0283094,0.00002882425,0.0001292608,0.00000859257,0.0002169133,0.002683432,0.9333271,0.03458016,0.0002105525,0.0003549518],"study_design_scores_gemma":[0.001766855,0.0008396973,0.1992664,0.00004519483,0.0002228155,0.0001563711,0.0007810711,0.00129141,0.7572739,0.02783833,0.009327917,0.001190105],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9260185,0.006148487,0.06585907,0.0001633049,0.00012455,0.0005646756,0.00003464457,0.00001476203,0.001072011],"genre_scores_gemma":[0.9929184,0.00007363898,0.00628727,0.0001601993,0.00007260168,0.00005025658,0.00005357022,0.00002777055,0.0003562969],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1760532,"threshold_uncertainty_score":0.8402153,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02189466709368893,"score_gpt":0.207270776293171,"score_spread":0.1853761091994821,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}