{"id":"W2072637022","doi":"10.1111/1755-0998.12225","title":"Ultra‐deep Illumina sequencing accurately identifies <scp>MHC</scp> class <scp>II</scp>b alleles and provides evidence for copy number variation in the guppy (<i>Poecilia reticulata</i>)","year":2014,"lang":"en","type":"article","venue":"Molecular Ecology Resources","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":102,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Poecilia; Genetics; Illumina dye sequencing; Allele; Guppy; Variation (astronomy); MHC class I; DNA sequencing; Major histocompatibility complex; Gene; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001742627,0.0005084939,0.0007206084,0.0002114903,0.0008161568,0.0001334991,0.000863603,0.0009443328,0.00002844896],"category_scores_gemma":[0.004718123,0.0004087845,0.0001942422,0.0002957711,0.001163103,0.000273268,0.0002580512,0.0006942057,0.0001591875],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009453685,"about_ca_system_score_gemma":0.00009548855,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002299012,"about_ca_topic_score_gemma":0.0006885756,"domain_scores_codex":[0.9954425,0.001645084,0.0007786629,0.0009816907,0.0001165313,0.001035572],"domain_scores_gemma":[0.9930266,0.005548766,0.0004857781,0.0006873193,0.0002031708,0.00004835514],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005652255,0.0001310133,0.012359,0.00009923297,0.0002462028,0.00003647425,0.0109389,0.00008420931,0.9716473,0.00119821,0.002840264,0.000362651],"study_design_scores_gemma":[0.004062613,0.001603429,0.04142349,0.0002006146,0.0005005575,0.000912906,0.01164287,0.0003729115,0.7975589,0.005455785,0.1358884,0.0003775253],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9904985,0.005015617,0.0008430856,0.0007815663,0.0005663065,0.001146742,0.00001764847,0.0001132245,0.001017266],"genre_scores_gemma":[0.9951518,0.0003326818,0.0002685115,0.001283069,0.00007562577,0.0003801862,0.00009546156,0.00004991244,0.002362751],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1740884,"threshold_uncertainty_score":0.9998364,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02035556410531086,"score_gpt":0.2523784058515,"score_spread":0.2320228417461891,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}