{"id":"W2072637022","doi":"10.1111/1755-0998.12225","title":"Ultra‐deep Illumina sequencing accurately identifies <scp>MHC</scp> class <scp>II</scp>b alleles and provides evidence for copy number variation in the guppy (<i>Poecilia reticulata</i>)","year":2014,"lang":"en","type":"article","venue":"Molecular Ecology Resources","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":102,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Poecilia; Genetics; Illumina dye sequencing; Allele; Guppy; Variation (astronomy); MHC class I; DNA sequencing; Major histocompatibility complex; Gene; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004748534,0.0003901603,0.0002388387,0.0002334274,0.0004235303,0.0004992182,0.0002756265,0.0004959761,0.00118795],"category_scores_gemma":[0.0009210939,0.000241076,0.0002627694,0.0002038851,0.0003418482,0.0002346825,0.0004774723,0.0006288083,0.0007173485],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000224453,"about_ca_system_score_gemma":0.0002124736,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002034139,"about_ca_topic_score_gemma":0.006206402,"domain_scores_codex":[0.9995121,0.00005835408,0.00001796218,0.0002381022,0.0001274791,0.0000460393],"domain_scores_gemma":[0.9994573,0.0001408152,0.0001289041,0.000103246,0.000115229,0.00005455482],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006048565,0.00002365512,0.009073324,0.00006715769,0.00003851054,0.00003046887,0.0001340821,0.0005661984,0.9779824,0.0001330448,0.0002669549,0.01162368],"study_design_scores_gemma":[0.00002347522,0.0003435008,0.260099,0.00004681839,0.000150302,0.0009063349,0.0001828673,0.0173451,0.7053252,0.001009713,0.01450428,0.00006343184],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9114652,0.0004640822,0.08255217,0.0001249876,0.00002470122,0.00005784609,0.001951018,0.0006470977,0.00271303],"genre_scores_gemma":[0.8874045,0.0002568118,0.1045063,0.0003899758,0.00001544618,0.000135296,0.004054492,0.0002540131,0.00298319],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002034139,"threshold_uncertainty_score":0.004044592,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02035556410531086,"score_gpt":0.2523784058515,"score_spread":0.2320228417461891,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}