{"id":"W2072654650","doi":"10.1093/gbe/evu042","title":"Increased Substitution Rates Surrounding Low-Complexity Regions within Primate Proteins","year":2014,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Biotechnology and Biological Sciences Research Council; Natural Sciences and Engineering Research Council of Canada","keywords":"Substitution (logic); Biology; Primate; Genome; Evolutionary biology; Genetics; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006220157,0.0001522142,0.0001539087,0.00004424608,0.0003283069,0.00001838918,0.0001071911,0.0002488,0.00001147806],"category_scores_gemma":[0.0001608912,0.0001372361,0.00004611502,0.00006769144,0.0002381623,0.000008485737,0.00006331045,0.00007206552,0.00001924253],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002886754,"about_ca_system_score_gemma":0.000048109,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008537054,"about_ca_topic_score_gemma":0.00005397404,"domain_scores_codex":[0.998884,0.0002625074,0.0001927869,0.0003642774,0.00004607487,0.0002503346],"domain_scores_gemma":[0.999501,0.00001505363,0.0001165299,0.000235497,0.00005295282,0.00007894018],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001023962,0.00002284017,0.005139124,0.00002358701,0.00001672459,2.520561e-7,0.00002327744,0.000006987179,0.9284925,0.06597752,0.000009216312,0.0001855676],"study_design_scores_gemma":[0.001552872,0.001107103,0.1394984,0.00007033096,0.00007106803,0.00009089992,0.0001027389,0.0004730537,0.7437478,0.1044638,0.007933288,0.0008886763],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.886027,0.0006134613,0.1124824,0.00009286151,0.00016102,0.0002779049,0.00001447664,0.00002946565,0.0003013978],"genre_scores_gemma":[0.9969512,0.00007430364,0.002221808,0.00008111916,0.0002627154,0.00005475172,0.0002526551,0.0000110411,0.0000903647],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1847448,"threshold_uncertainty_score":0.5596325,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01907123989295637,"score_gpt":0.2558109973525715,"score_spread":0.2367397574596151,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}