{"id":"W2073192575","doi":"10.1371/journal.pone.0102868","title":"Sequence, Structural and Expression Divergence of Duplicate Genes in the Bovine Genome","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Alberta Innovates; Alberta Livestock and Meat Agency; Genome Alberta; Government of Alberta; Genome Canada","keywords":"Biology; Gene; Genetics; Genome; Gene duplication; Exon; Functional divergence; Intron; Sequence analysis; Gene expression; Bovine genome; Gene family","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004204285,0.0001693081,0.0007104672,0.00122786,0.0004097692,0.0004887673,0.0002207934,0.0003342515,0.0004772948],"category_scores_gemma":[0.0007167964,0.0002069643,0.0003655144,0.001600337,0.0003144068,0.0002707243,0.0003398241,0.0003633688,0.00018422],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000420388,"about_ca_system_score_gemma":0.0002293993,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001598481,"about_ca_topic_score_gemma":0.002329381,"domain_scores_codex":[0.9995922,0.00005348691,0.00002827104,0.0001501211,0.0001170147,0.00005887843],"domain_scores_gemma":[0.9994874,0.0001681262,0.0001550536,0.00004433142,0.00007281923,0.00007234163],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005202642,0.0000267668,0.06705052,0.0002897206,0.000116864,0.0004886813,0.0005916719,0.0005776985,0.916886,0.0003217067,0.0000918631,0.0130383],"study_design_scores_gemma":[0.00002565432,0.0001982886,0.9479216,0.00003595636,0.0001725578,0.00248459,0.0003678534,0.003006012,0.04152017,0.0004992773,0.003727714,0.00004034648],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954366,0.001867645,0.001738869,0.00001884442,0.000004326259,0.000004186027,0.0006087944,0.00001244125,0.0003083481],"genre_scores_gemma":[0.9940001,0.0005629921,0.003369379,0.00004490703,0.000006504685,0.00001166593,0.00166547,0.00001322635,0.0003258395],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001598481,"threshold_uncertainty_score":0.003178358,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02999861465835257,"score_gpt":0.2263103653338728,"score_spread":0.1963117506755202,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}