{"id":"W2073259007","doi":"10.1016/s1672-0229(08)60031-5","title":"Bioinformatic Comparison of Bacterial Secretomes","year":2009,"lang":"en","type":"article","venue":"Genomics Proteomics & Bioinformatics","topic":"Biochemical and Structural Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"Laurentian University","funders":"","keywords":"Proteome; Bacteria; Biology; Gram-negative bacteria; Bacterial genome size; Genome; Signal peptide; Genome size; Computational biology; Microbiology; Gene; Peptide sequence; Genetics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000134554,0.0002331722,0.0003199788,0.0001007889,0.00007705909,0.00005173573,0.0003267761,0.0002608916,0.00002084891],"category_scores_gemma":[0.00005923519,0.0002107104,0.0001252538,0.0001573095,0.00008741781,0.00002418334,0.00009943436,0.0001252428,0.00001606594],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002989012,"about_ca_system_score_gemma":0.00009556415,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001217151,"about_ca_topic_score_gemma":8.598486e-7,"domain_scores_codex":[0.9985463,0.00001554677,0.0008428716,0.0001490503,0.0001571181,0.0002891396],"domain_scores_gemma":[0.9989235,0.000005966046,0.0004731553,0.0003731255,0.0001174609,0.0001067632],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001550772,0.00003568994,0.0002264482,0.00007521031,0.00002690517,1.0132e-7,0.0005489966,0.00004671833,0.9856929,0.0002912846,0.0003174182,0.01258323],"study_design_scores_gemma":[0.0006456674,0.0005428199,0.001069121,0.00002052189,0.00002346099,0.00001490097,0.0002071501,0.008069593,0.9836903,0.0004115565,0.004958293,0.0003466218],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9872772,0.00006974145,0.01083865,0.00009974714,0.0001842623,0.0004799046,0.00009943927,0.00002319022,0.000927918],"genre_scores_gemma":[0.938033,0.00008516962,0.06008965,0.0002526809,0.0001931147,0.000006974011,0.00126944,0.00001381434,0.00005613475],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.049251,"threshold_uncertainty_score":0.859252,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009038619563372981,"score_gpt":0.2441155075978727,"score_spread":0.2350768880344997,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}