{"id":"W2073502643","doi":"10.1016/j.celrep.2014.04.038","title":"Mutational Context and Diverse Clonal Development in Early and Late Bladder Cancer","year":2014,"lang":"en","type":"article","venue":"Cell Reports","topic":"Bladder and Urothelial Cancer Treatments","field":"Medicine","cited_by":153,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Centre for Applied Research in Cancer Control","funders":"","keywords":"APOBEC; Biology; Gene; Context (archaeology); Transcriptome; Genetics; Mutation; Exome sequencing; Cancer; Exome; Cancer research; Genome; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008585589,0.00008702531,0.0001389384,0.00004194835,0.00003940546,0.00001100974,0.000009073586,0.00003972556,0.0001333759],"category_scores_gemma":[0.00001140288,0.00007302495,0.0000133319,0.00003500668,0.00004296424,0.00004016168,0.0000207455,0.00006005068,0.00000466941],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004062744,"about_ca_system_score_gemma":0.0001280607,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000451901,"about_ca_topic_score_gemma":0.0001840493,"domain_scores_codex":[0.9993521,0.0000105299,0.0001739799,0.0002076682,0.0001386303,0.0001171023],"domain_scores_gemma":[0.9997209,0.000018257,0.00005615342,0.00006980446,0.0000363316,0.00009856808],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007923933,0.0000792878,0.9597402,0.00004567387,0.00005186209,0.0006957282,0.001872158,0.000003279128,0.000816697,0.00001908803,0.0002155321,0.03638126],"study_design_scores_gemma":[0.001388292,0.00006732156,0.9787971,0.00004605457,0.00004230746,0.0001357359,0.00004502913,0.00002179697,0.003505426,0.0001439408,0.01571657,0.00009037847],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947236,0.0006432931,0.00001654975,0.0001168958,0.0001077813,0.0001728974,0.000001848413,0.00001076963,0.004206414],"genre_scores_gemma":[0.9965392,0.00005034879,0.0002378155,0.000368727,0.00004639156,0.00002972432,0.00001044224,0.000009130544,0.002708209],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03629088,"threshold_uncertainty_score":0.2977871,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01493620732470649,"score_gpt":0.2578736515628821,"score_spread":0.2429374442381756,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}