{"id":"W2073623948","doi":"10.1371/journal.pone.0016087","title":"Nationwide Molecular Surveillance of Pandemic H1N1 Influenza A Virus Genomes: Canada, 2009","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Biology; Virus; Pandemic; Influenza A virus; Genome; Virology; Clade; Viral evolution; Genetics; Sanger sequencing; Antigenic drift; Gene; Mutation; Phylogenetics; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty); Disease; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002810657,0.0001501932,0.0004500893,0.0001315893,0.00005544037,0.000003909195,0.0001531244,0.00006325127,0.0002635639],"category_scores_gemma":[0.0008561047,0.0001369006,0.0000493357,0.0002720775,0.0001155207,0.00005011134,0.00008383123,0.0002165798,0.00003753911],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00017462,"about_ca_system_score_gemma":0.0006709237,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.1715226,"about_ca_topic_score_gemma":0.1380533,"domain_scores_codex":[0.9981364,0.00006247219,0.0003642376,0.000221873,0.0008516973,0.0003632947],"domain_scores_gemma":[0.9986707,0.0000925889,0.0001165254,0.0003872754,0.0005851058,0.0001477916],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004276858,0.000865838,0.702775,0.0005215721,0.001422048,0.0001144757,0.000828467,0.000004568428,0.2914685,0.0001178164,0.0008488764,0.000605122],"study_design_scores_gemma":[0.00239536,0.0004198982,0.6751196,0.0003371718,0.0001899176,0.00000666658,0.0001515703,0.0001005586,0.3175093,0.0001869379,0.003237761,0.0003452273],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.984612,0.006169279,0.00001353074,0.00008886455,0.00001682612,0.0004541765,0.00009870569,0.0000446247,0.008502003],"genre_scores_gemma":[0.995997,0.0006509466,0.001315865,0.001528847,0.00004541718,0.0000526933,0.000008283385,0.00002809061,0.0003729175],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03346938,"threshold_uncertainty_score":0.877675,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1561638362064557,"score_gpt":0.3142760611797836,"score_spread":0.1581122249733279,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}