{"id":"W2074054887","doi":"10.1055/s-2009-1216450","title":"Using DNA Barcodes to Identify Rosaceae","year":2009,"lang":"en","type":"article","venue":"Planta Medica","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute on Drug Abuse; Agricultural Research Service; University of British Columbia; University of Illinois at Urbana-Champaign; Chinese Academy of Sciences; Kurukshetra University; University of Illinois at Chicago; National Oceanic and Atmospheric Administration; U.S. Food and Drug Administration; National Science Foundation of Sri Lanka; University of Colombo; U.S. Department of Agriculture; Western Carolina University; International Science Council; National Center for Complementary and Alternative Medicine; China Academy of Traditional Chinese Medicine; National Institutes of Health; National Center for Research Resources; National Institute of Allergy and Infectious Diseases; Türkiye Bilimsel ve Teknolojik Araştırma Kurumu; Hong Kong Polytechnic University; National Science Foundation; Deutsche Krebshilfe; National Natural Science Foundation of China; Tata Trusts; University Grants Commission; Wake Forest University","keywords":"DNA barcoding; Internal transcribed spacer; Biology; Ribosomal DNA; Amplicon; rpoB; Ribosomal RNA; Rosaceae; DNA sequencing; Evolutionary biology; Electropherogram; Computational biology; Genetics; DNA; Botany; Gene; Phylogenetics; Polymerase chain reaction; 16S ribosomal RNA","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001180414,0.000107222,0.0001148215,0.00002969271,0.00008119359,0.00001622163,0.0001671878,0.00006835086,0.0000175001],"category_scores_gemma":[0.00005629414,0.00009803965,0.00004139663,0.00004854916,0.00002777621,3.765878e-7,0.00007186864,0.00004249643,0.00001802018],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000683018,"about_ca_system_score_gemma":0.00003661676,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001430065,"about_ca_topic_score_gemma":0.00001377852,"domain_scores_codex":[0.9992781,0.00001851149,0.0001291831,0.0002371172,0.000115947,0.0002210837],"domain_scores_gemma":[0.9996129,0.000007379431,0.0000292079,0.0002002969,0.00002424201,0.0001259562],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002396975,0.00001972544,0.001009427,0.000003390868,0.0000278611,0.000006170939,0.00008460104,0.00002497555,0.9907269,0.0000333552,0.005156498,0.00288311],"study_design_scores_gemma":[0.0008599192,0.0006143295,0.1013121,0.00005876891,0.00007965079,0.0001411654,0.0002271816,0.0001433438,0.6311216,0.0006465887,0.2641626,0.0006327482],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953997,0.0009682861,0.0008966732,0.0005068603,0.0002102758,0.00009765451,0.00003340461,0.000004582299,0.001882636],"genre_scores_gemma":[0.9960272,0.0002591748,0.001894839,0.001288746,0.0003470679,0.000003011655,0.00002707178,0.000008451812,0.0001444567],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3596053,"threshold_uncertainty_score":0.3997941,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02675497211440133,"score_gpt":0.3074669098931766,"score_spread":0.2807119377787753,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}